Fission Yeast GO slim terms

"GO slims" are subsets of the Gene Ontology (GO) that provide a broad overview of annotation distribution. Slims can offer a useful overview of a genome or the results of a large-scale experiment. For more information on GO slims, please see the GO Slim Guide at the Gene Ontology website.

The GO slim term set constructed for fission yeast, shown below, provides almost complete coverage of gene products annotated to biological process terms. This slim set is a good starting point for users who wish to identify terms of biological interest to create a "custom slim", or to become familiar with the genome contents. The current annotation totals link to the AmiGO browser, where you can i) access the complete lists of annotated gene products; ii) explore child terms and how annotations are distributed among slim terms and child terms; iii) use the "data source" filter to see annotated gene products in other organisms (note that in this verison of AmiGO the "species filter" is not working).

Tips for using GO Slim sets and building user defined slims

 

GO Slim Terms and Annotations

GO Term Name

GO ID

(QuickGO link)

Previous annotations

2010-02-25

Current annotations

2011-09-29

ascospore formation GO:0030437 104 102
carbohydrate metabolic process GO:0005975 244 250
cell adhesion GO:0007155 24 24
cell wall organization or biogenesis GO:0070882 121 132
cellular amino acid metabolic process GO:0006520 199 221
chromatin modification GO:0016568 213 216
chromosome organization GO:0051276 387 420
chromosome segregation GO:0007059 192 199
cofactor metabolic process GO:0051186 153 152
conjugation with cellular fusion GO:0000747 109 115
cytokinesis GO:0000910 148 154
cytoplasmic translation GO:0006412 630 260
cytoskeleton organization GO:0007010 222 228
protein maturation GO:0051604 N/A 29
signaling GO:0023052 374 379
tRNA metabolic process GO:0006399 128 145
transcription, DNA-dependent GO:0006351 N/A 166
transmembrane transport GO:0055085 324 304
vacuole organization GO:0007033 34 36
vesicle-mediated transport GO:0016192 302 321
vitamin metabolic process GO:0006766 71 39
other process (refers to proteins only)   31 715
unknown process (refers to proteins only)   834 619