Internet Resources

S. pombe Community Websites

• PombeWeb maintained by Susan Forsburg
  • Fission yeast researchers at PombeWeb
• PombeNet maintained by Susan Forsburg
  • About pombe at PombeNet
  • Working with pombe at PombeNet
• PubMed RSS Feed Feed for current S. pombe related publications.

Ontologies

• The Gene Ontology Consortium controlled vocabulary
• AmiGO Search and browse GO annotation
• The QuickGO browser at EBI
• SGD GO documentation to help SGD users become familiar with GO
• Onto-Express find significant GO terms in lists of genes
• GOTermFinder find significant GO terms in lists of genes
• AnGeLi: Analysis of Gene Lists (UCL) uses GO, phenotypes, interactions, etc.
• Sequence Ontology

Interactions, Pathways and Networks

• BioGRID Genetic and physical interactions
• Interactions (IntAct) Known interactions for S. pombe from the IntAct database
• Reactome pathway data S. pombe entry point.
• esyN Web-based tool for building, sharing, and viewing network data
• STRING Protein–protein interaction network database

Sequence Analysis Tools

General tools

• GBrowse Wiki for S. pombe
• Artemis Sequence viewer and analysis tool
• Genome Atlas DNA structural atlas
• Map viewer at the NCBI
• Mitochondrial Genome Information

Sequence Features, Protein Families, Orthologues

• Todd Lowe's S. pombe genomic tRNA analysis
• S. pombe membrane protein library
• RSAT Regulatory sequence analysis tools (includes Fungi server)
• Pfam protein families (search or browse)
• SCOP Superfamily assignments
• PredictNLS Nuclear localization signal prediction
• YOGY A resource for retrieving orthologous proteins
• EPD Eukaryotic Promoter Database, S. pombe section

Gene Expression

• Gene Expression Viewer at UCL
• S. pombe PeptideAtlas compendium of peptides identified in tandem mass spectrometry proteomics experiments

Experimental tools

• PRIMED Primers for deleting and tagging yeast genes (S. pombe and S. cerevisiae; downloadable spreadsheets)

Strains and Constructs

• Japanese National Bio Resource Project
• Postgenome database service Chemical Genetics Laboratory, Riken
• Orfeome clones Riken Bioresource Centre
• Addgene Collects and distributes plasmids

Experimental protocols

• The Forsburg lab technical information e.g. Protocols
• Wolf Lab Protocols

S. cerevisiae Resources

• SGD Saccharomyces Genome Database
• Saccharomyces genome resequencing at Sanger