SPAC1039.02


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPAC1039.02 Feature Typeprotein coding
Synonyms Name Description
Productphosphoprotein phosphatase (predicted) Product Size601aa, 68.07 kDa
Genomic Location Chromosome I, 5448735-5451642 (2908nt); CDS:5449717-5451522 (1806nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0016787hydrolase activityIEAIPR004843GO_REF:0000002845
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005737cytoplasmIDAPMID:168233724204
GO:0005783endoplasmic reticulumIDAPMID:16823372594
GO:0016020membraneIEAUniProtKB-KW:KW-0472GO_REF:00000371450
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC1039.02ΔNullPMID:204732893751
MicroscopySPAC1039.02ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001MicroscopySPAC1039.02ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
154487355451642
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00149 Pfam IPR004843 Phosphoesterase domain 49 272 20
PTHR11575:SF11 HMMPANTHER IPR014485 Predicted phosphoesterase, C1039.02 type 22 492 3
PTHR11575 HMMPANTHER IPR006179 5'-Nucleotidase/apyrase 22 492 3
3.90.780.10 Gene3D IPR008334 5'-Nucleotidase, C-terminal 389 600 3
3.60.21.10 Gene3D 38 388 23
SSF55816 SuperFamily IPR008334 5'-Nucleotidase, C-terminal 382 596 3
SSF56300 SuperFamily Metallo-dependent phosphatase-like 41 379 22
PIRSF017316 PIRSF IPR014485 Predicted phosphoesterase, C1039.02 type 1 600 3
SignalP-noTM signalp 1 24 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReferenceCount
SO:0000418signal_peptide278

Protein Properties

Ave. residue weight 113.25 Da
Charge -18.50
Isoelectric point 4.75
Molecular weight 68.07 kDa
Number of residues 601
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3723.38during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
70314.53during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
7.7during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
4.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi only620
conserved in fungi4599
conserved in eukaryotes4514
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
atg13autophagy associated protein kinase regulatory subunit Atg13 Negative GeneticPMID:22681890
SPAC227.05prefoldin subunit 4 (predicted) Negative GeneticPMID:22681890
sck2serine/threonine protein kinase Sck2 Negative GeneticPMID:24463365
php3CCAAT-binding factor complex subunit Php3 Negative GeneticPMID:22681890
atb2tubulin alpha 2 Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
dsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
Negative GeneticPMID:22681890
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
SPCC70.06nuclear export factor (predicted) Negative GeneticPMID:22681890
xap5xap-5-like protein Negative GeneticPMID:24957674
usp102U1 snRNP-associated protein Usp102 Negative GeneticPMID:22681890
toc1Tor complex Tor2 interacting protein 1 Negative GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC1039.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1039.02 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1039.02 BioGRID Interaction Datasets
Expression Viewer SPAC1039.02 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1039.02 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1039.02 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1039.02 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1039.02 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1039.02 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1039.02 Cell Cycle Data
GEO SPAC1039.02 GEO profiles
PInt SPAC1039.02 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1039.02 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN36/36E06Orfeome Localization Data
UniProtKB/SwissProtQ9US39Uncharacterized protein C1039.02
ModBaseQ9US39Database of comparative protein structure models
STRINGQ9US39Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594993phosphoprotein phosphatase (predicted)
RefSeq mRNANM_001020424972h- phosphoprotein phosphatase (predicted) (SPAC1039.02), mRNA
European Nucleotide ArchiveBAA87266.1ENA Protein Mapping
European Nucleotide ArchiveCAB63538.1ENA Protein Mapping
UniParcUPI00000695BFUniProt Archive

Literature for SPAC1039.02

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014