SPAC1039.02

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1039.02 Gene Start5448735
Synonyms Gene End5451642
Productphosphoprotein phosphatase (predicted) Gene Length2908
Feature Typeprotein coding CDS Start5449717
Name Description CDS End5451522
Characterisation Statusconserved_unknown CDS Length1806

Ensembl Gene Location
  1. SPNCRNA.271
  2. SPNCRNA.272
  3. SPNCRNA.273
  4. SPAC1039.01
  5. SPAC1039.02
  6. SPAC1039.03
  7. prl21
  8. SPAC1039.04
  9. klf1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001491viable vegetative cellMicroscopySPAC1039.02delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0016787hydrolase activityIEAIPR004843, IPR008334, IPR006179GO_REF:0000002
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmIDAPMID:16823372
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0016020membraneIEASL-0162GO_REF:0000039
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
154487355451642

References

Region Start End Reference
three_prime_UTR54515235451642PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00149 IPR004843 Pfam Metallophosphoesterase domain 49 272 20
G3DSA:3.60.21.10 Gene3D 38 388 22
G3DSA:3.90.780.10 IPR008334 Gene3D 389 600 3
SSF56300 SuperFamily 41 379 22
SSF55816 IPR008334 SuperFamily 382 596 3
PIRSF017316 IPR014485 PIRSF Predicted phosphoesterase, C1039.02 type 1 600 3
PTHR11575 IPR006179 hmmpanther 5'-Nucleotidase/apyrase 15 471 3
PTHR11575:SF11 IPR014485 hmmpanther 15 471 3
SignalP-noTM signalp 1 24 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide

Protein Properties

Ave. residue weight 113.25 Da
Charge -18.50
Isoelectric point 4.75
Molecular weight 68.07 kDa
Number of residues 601
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide3723.38PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide70314.53PMID:23101633
RNA levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide7.7PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide4.1PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
toc1Tor complex Tor2 interacting protein 1 Negative GeneticPMID:22681890
SPAC227.05prefoldin subunit 4 (predicted) Negative GeneticPMID:22681890
dsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
Negative GeneticPMID:22681890
atg13autophagy associated protein kinase regulatory subunit Atg13 Negative GeneticPMID:22681890
SPCC70.06nuclear export factor (predicted) Negative GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Negative GeneticPMID:22681890
php3CCAAT-binding factor complex subunit Php3 Negative GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
atb2tubulin alpha 2 Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC1039.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1039.02 Retrieval of eukaryotic orthologs
BioGrid SPAC1039.02 BioGRID Interaction Datasets
Bähler Lab SPAC1039.02 Cell Cycle Expression Profile
Bähler Lab SPAC1039.02 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1039.02 Pheromone response/mating expression profiles
Bähler Lab SPAC1039.02 Environmental stress expression profiles
Bähler Lab SPAC1039.02 Bähler Lab Transcriptome Viewer
Cyclebase SPAC1039.02 Cell Cycle Data
PInt SPAC1039.02 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1039.02 Entrez Gene
SPD / RIKEN36/36E06Orfeome Localization Data
EntrezGene2543024phosphoprotein phosphatase (predicted)
WikiGene2543024phosphoprotein phosphatase (predicted)
UniProtKB/SwissProtQ9US39Uncharacterized protein C1039.02
ModBaseQ9US39Database of comparative protein structure models
Pfam Protein DomainsQ9US39Pfam Domain Arrangement
RefSeq PeptideNP_594993phosphoprotein phosphatase (predicted)
RefSeq mRNANM_001020424972h- phosphoprotein phosphatase (predicted) (SPAC1039.02), mRNA
European Nucleotide ArchiveBAA87266ENA Protein Mapping
European Nucleotide ArchiveCAB63538ENA Protein Mapping
SPD / RIKEN36/36E06Orfeome Localization Data

Literature for SPAC1039.02
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013