SPAC1039.02


Gene Standard NameUnassigned Characterisation Statusconserved unknown
Systematic IDSPAC1039.02 Feature Typeprotein coding
Synonyms Name Description
Productphosphoprotein phosphatase (predicted) Product Size601aa, 68.07 kDa
Genomic Location Chromosome I, 5448735-5451642 (2908nt); CDS:5449717-5451522 (1806nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
hydrolase activity832
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytoplasm4213
Annotation ExtensionEvidenceWith/FromReference
endoplasmic reticulum599
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationSPAC1039.02Δ3850

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPAC1039.02Δ3102
Target Of
OntologyRelationshipGeneProduct
FYPO affected by mutation in upf1 ATP-dependent RNA helicase Upf1
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons5448735..5451642
mRNA5448735..5451642
5' UTR5448735..5449716PMID:21511999
CDS5449717..5451522
3' UTR5451523..5451642PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00149 Pfam IPR004843 Calcineurin-like phosphoesterase domain, ApaH type 49 272 19
PTHR11575 HMMPANTHER IPR006179 5'-Nucleotidase/apyrase 328 514 3
PTHR11575 HMMPANTHER IPR006179 5'-Nucleotidase/apyrase 18 305 3
PTHR11575:SF22 HMMPANTHER 328 514 3
PTHR11575:SF22 HMMPANTHER 18 305 3
3.90.780.10 Gene3D IPR008334 5'-Nucleotidase, C-terminal 389 600 3
3.60.21.10 Gene3D IPR029052 Metallo-dependent phosphatase-like 38 388 23
SSF55816 SuperFamily IPR008334 5'-Nucleotidase, C-terminal 382 596 3
SSF56300 SuperFamily IPR029052 Metallo-dependent phosphatase-like 41 379 22
PIRSF017316 PIRSF IPR014485 Predicted phosphoesterase, C1039.02 type 4 600 3
SignalP-noTM signalp 1 24 207

View domain organization at Pfam

Term IDTerm NameReferenceCount
SO:0000418signal_peptide279

Protein Properties

Ave. residue weight 113.25 Da
Charge -18.50
Codon Adaptation Index 0.58
Isoelectric point 4.75
Molecular weight 68.07 kDa
Number of residues 601
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPAC1039.02

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3723.38during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
70314.53during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
7.7during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
4.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3093
conserved in fungi only616
conserved in fungi4607
conserved in eukaryotes4517
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPAC1039.02 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withdsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:22681890
negative genetic interaction withtoc1Tor complex Tor2 interacting protein 1 Negative GeneticPMID:22681890
negative genetic interaction withsck2serine/threonine protein kinase Sck2 Negative GeneticPMID:24463365
negative genetic interaction withatb2tubulin alpha 2 Negative GeneticPMID:22681890
negative genetic interaction withxap5xap-5-like protein Negative GeneticPMID:24957674
negative genetic interaction withphp3CCAAT-binding factor complex subunit Php3 Negative GeneticPMID:22681890
negative genetic interaction withres1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
negative genetic interaction withusp102U1 snRNP-associated protein Usp102 Negative GeneticPMID:22681890
negative genetic interaction withgim3prefoldin subunit 4, Gim3 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withatg13autophagy associated protein kinase regulatory subunit Atg13 Negative GeneticPMID:22681890
negative genetic interaction withdsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
negative genetic interaction withsac32nuclear export factor Sac32 (predicted) Negative GeneticPMID:22681890
negative genetic interaction witheso1mitotic cohesin N-acetyltransferase/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
positive genetic interaction withkin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC1039.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1039.02 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1039.02 BioGRID Interaction Datasets
Expression Viewer SPAC1039.02 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1039.02 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1039.02 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1039.02 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1039.02 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1039.02 Transcriptome Viewer (Bähler Lab)
GEO SPAC1039.02 GEO profiles
PInt SPAC1039.02 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1039.02 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1039.02 Fission yeast phenotypic data & analysis
Cyclebase SPAC1039.02.1 Cell Cycle Data
SPD / RIKEN36/36E06Orfeome Localization Data
UniProtKB/SwissProtQ9US39Uncharacterized protein C1039.02
ModBaseQ9US39Database of comparative protein structure models
STRINGQ9US39Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594993phosphoprotein phosphatase (predicted)
RefSeq mRNANM_001020424972h- phosphoprotein phosphatase (predicted) (SPAC1039.02), mRNA
European Nucleotide ArchiveBAA87266.1ENA Protein Mapping
European Nucleotide ArchiveCAB63538.1ENA Protein Mapping
UniParcUPI00000695BFUniProt Archive

Literature for SPAC1039.02

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016