SPAC1093.04c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1093.04c Gene Start4618620
Synonyms Gene End4613715
ProducttRNA nucleotidyltransferase (predicted) Gene Length4906
Feature Typeprotein coding CDS Start4618140
Name Description CDS End4616462
Characterisation Statusbiological_role_inferred CDS Length1679

Ensembl Gene Location
  1. ppr5
  2. SPAC1093.02
  3. SPAC1093.03
  4. SPAC1093.04c
  5. SPNCRNA.1005
  6. SPAC1093.05
  7. dhc1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC1093.04cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAUniProtKB:KW-0694GO_REF:0000037
GO:0004810tRNA adenylyltransferase activityISOSGD:S000000970GO_REF:0000024
GO:0005524ATP bindingIEAUniProtKB:KW-0067GO_REF:0000037
GO:0052927CTP:tRNA cytidylyltransferase activityIEAEC:2.7.7.72GO_REF:0000003
GO:0052928CTP:3'-cytidine-tRNA cytidylyltransferase activityIEAEC:2.7.7.72GO_REF:0000003
GO:0052929ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activityIEAEC:2.7.7.72GO_REF:0000003
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0001680tRNA 3'-terminal CCA additionIEAEC:2.7.7.72GO_REF:0000003
GO:0006400tRNA modificationISOSGD:S000000970GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
146186204618360
246182974617997
346179354617353
446172814616668
546166234613715

References

Region Start End Reference
three_prime_UTR46164614613715PMID:21511999
five_prime_UTR46182974618141PMID:21511999
three_prime_UTR46164614613715PMID:21511999
five_prime_UTR46186204618360PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF12627 Pfam 204 263 2
PF01743 IPR002646 Pfam Poly A polymerase, head domain 39 177 2
G3DSA:1.10.3090.10 Gene3D 174 392 2
G3DSA:3.30.460.10 Gene3D 16 173 11
SSF81301 SuperFamily 27 174 11
SSF81891 SuperFamily 175 487 2
PTHR13734:SF10 hmmpanther 3 499 2
PTHR13734 hmmpanther 3 499 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.11 Da
Charge 7.00
Isoelectric point 7.48
Molecular weight 57.55 kDa
Number of residues 500
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide622.45PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide2225.35PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.49PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.7PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
multiple translational start sites possible
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:21436456
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External References
Database Identifier Description
NBRP SPAC1093.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1093.04c Retrieval of eukaryotic orthologs
BioGrid SPAC1093.04c BioGRID Interaction Datasets
Bähler Lab SPAC1093.04c Cell Cycle Expression Profile
Bähler Lab SPAC1093.04c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1093.04c Pheromone response/mating expression profiles
Bähler Lab SPAC1093.04c Environmental stress expression profiles
Bähler Lab SPAC1093.04c Bähler Lab Transcriptome Viewer
Cyclebase SPAC1093.04c Cell Cycle Data
PInt SPAC1093.04c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1093.04c Entrez Gene
IntEnz2.7.7.25
WikiGene2542977tRNA nucleotidyltransferase (predicted)
EntrezGene2542977tRNA nucleotidyltransferase (predicted)
SPD / RIKEN45/45G10Orfeome Localization Data
UniProtKB/SwissProtQ9UTQ0Putative CCA tRNA nucleotidyltransferase 1
ModBaseQ9UTQ0Database of comparative protein structure models
Pfam Protein DomainsQ9UTQ0Pfam Domain Arrangement
RefSeq PeptideNP_594651tRNA nucleotidyltransferase (predicted)
RefSeq mRNANM_001020080972h- tRNA nucleotidyltransferase (predicted) (SPAC1093.04c), mRNA
European Nucleotide ArchiveCAB60249ENA Protein Mapping
UniParcUPI000053FDF5UniProt Archive

Literature for SPAC1093.04c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013