rpl3002 (SPAC1250.05)


Gene Standard Namerpl3002 Characterisation Statusbiological role inferred
Systematic IDSPAC1250.05 Feature Typeprotein coding
Synonymsrpl30, rpl30-2 Name Description
Product60S ribosomal protein L30 (predicted) Product Size117aa, 12.24 kDa
Genomic Location Chromosome I, 5095925-5095073 (853nt); CDS:5095810-5095211 (600nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
rRNA processing197
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationrpl3002Δ3850

Cell Phenotype

Term NameGenotypesCount
normal mRNA level during vegetative growth16
affecting rpl3002rpl3002Δi (91-337)
viable vegetative cell with normal cell morphologyrpl3002Δ3102

FYPO Multi-allele Phenotypes

Cell Phenotype

Term NameGenotypes
normal mRNA level during vegetative growth
affecting rpl3002rpl3002Δi (91-337), nab2::kanMX6
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons5095925..5095548, 5095301..5095073
Intron5095547..5095302
mRNA5095925..5095073
5' UTR5095925..5095811PMID:21511999
CDS5095810..5095548, 5095301..5095211
3' UTR5095210..5095073PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01248 Pfam IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 23 115 7
PS00993 Prosite Patterns IPR022991 Ribosomal protein L30e, conserved site 90 110 2
PS00709 Prosite Patterns IPR022991 Ribosomal protein L30e, conserved site 34 58 2
PTHR11449 HMMPANTHER IPR000231 Ribosomal protein L30e 12 115 2
3.30.1330.30 Gene3D IPR029064 50S ribosomal protein L30e-like 17 115 10
SSF55315 SuperFamily IPR029064 50S ribosomal protein L30e-like 23 116 10

View domain organization at Pfam

Protein Properties

Ave. residue weight 104.64 Da
Charge 11.00
Codon Adaptation Index 0.47
Isoelectric point 10.40
Molecular weight 12.24 kDa
Number of residues 117
Modifications

Protein Modifications

Term NameResidueCount
phosphorylated residue 2511
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
ubiquitinylated lysineK25, K28 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K25 PMID:26412298
mass spectrometry evidence K28 PMID:26412298
IDA PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rpl3002 (SPAC1250.05)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
90255during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
94865during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
96012during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
93967during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
87093.72during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
91816during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
13649.15during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
19during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
3.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4607
conserved in eukaryotes4517
conserved in bacteria1005
conserved in metazoa3427
conserved in vertebrates3402
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPAC1250.05 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bynab2poly(A) binding protein Nab2 (predicted) Affinity Capture-RNAPMID:24081329
External References
Database Identifier Description
NBRP SPAC1250.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1250.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1250.05 BioGRID Interaction Datasets
Expression Viewer SPAC1250.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1250.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1250.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1250.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1250.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1250.05 Transcriptome Viewer (Bähler Lab)
GEO SPAC1250.05 GEO profiles
PInt SPAC1250.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1250.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1250.05 Fission yeast phenotypic data & analysis
Cyclebase SPAC1250.05.1 Cell Cycle Data
SPD / RIKEN31/31F05Orfeome Localization Data
UniProtKB/SwissProtQ9UTP060S ribosomal protein L30-2
ModBaseQ9UTP0Database of comparative protein structure models
STRINGQ9UTP0Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59485760S ribosomal protein L30
RefSeq mRNANM_001020286972h- 60S ribosomal protein L30 (rpl3002), mRNA
European Nucleotide ArchiveCAB54828.1ENA Protein Mapping
UniParcUPI0000132F9CUniProt Archive

Literature for rpl3002

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016