rpl3002 (SPAC1250.05)


Gene Standard Namerpl3002 Characterisation Statusbiological_role_inferred
Systematic IDSPAC1250.05 Feature Typeprotein coding
Synonymsrpl30, rpl30-2 Name Description
Product60S ribosomal protein L30 (predicted) Product Size117aa, 12.24 kDa
Genomic Location Chromosome I, 5095925-5095073 (853nt); CDS:5095810-5095211 (600nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation465
Annotation ExtensionEvidenceWith/FromReference
rRNA processing196
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
viable vegetative cell populationrpl3002ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
normal mRNA level during vegetative growth12
affecting rpl3002rpl3002Δi (91-337)Not specified
viable vegetative cell with normal cell morphologyrpl3002ΔNull3094
Target Of
OntologyRelationshipGeneProduct
FYPO affected by mutation in mtl1 TRAMP complex ATP-dependent RNA helicase (predicted)
FYPO affected by mutation in nab2 poly(A) binding protein Nab2 (predicted)
FYPO affected by mutation in pab2 poly(A) binding protein Pab2
FYPO affected by mutation in prp1 U4/U6 x U5 tri-snRNP complex subunit Prp1
FYPO affected by mutation in prp2 U2AF large subunit (U2AF-59)
FYPO affected by mutation in red1 RNA elimination defective protein Red1
FYPO affected by mutation in rpl3001 60S ribosomal protein L30 (predicted)
FYPO affected by mutation in rrp6 exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
GO regulated by nab2 poly(A) binding protein Nab2 (predicted)
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons5095925..5095548, 5095301..5095073
Introns5095547..5095302
mRNA5095925..5095073
5' UTR5095925..5095811PMID:21511999
CDS5095810..5095548, 5095301..5095211
3' UTR5095210..5095073PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01248 Pfam IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 23 115 7
PS00993 Prosite Patterns IPR022991 Ribosomal protein L30e, conserved site 90 110 2
PS00709 Prosite Patterns IPR022991 Ribosomal protein L30e, conserved site 34 58 2
PTHR11449:SF1 HMMPANTHER 11 117 2
PTHR11449 HMMPANTHER IPR000231 Ribosomal protein L30e 11 117 2
3.30.1330.30 Gene3D IPR029064 50S ribosomal protein L30e-like 17 115 10
SSF55315 SuperFamily IPR029064 50S ribosomal protein L30e-like 23 116 10

View domain organization at Pfam

Protein Properties

Ave. residue weight 104.64 Da
Charge 11.00
Isoelectric point 10.40
Molecular weight 12.24 kDa
Number of residues 117
Modifications

Protein Modifications

Term NameResidueCount
phosphorylated residue 1927
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
90255during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
94865during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
96012during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
93967during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
91816during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
87093.72during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
13649.15during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
19during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
3.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bynab2poly(A) binding protein Nab2 (predicted) Affinity Capture-RNAPMID:24081329
External References
Database Identifier Description
NBRP SPAC1250.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1250.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1250.05 BioGRID Interaction Datasets
Expression Viewer SPAC1250.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1250.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1250.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1250.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1250.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1250.05 Transcriptome Viewer (Bähler Lab)
GEO SPAC1250.05 GEO profiles
PInt SPAC1250.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1250.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1250.05 Fission yeast phenotypic data & analysis
Cyclebase SPAC1250.05.1 Cell Cycle Data
SPD / RIKEN31/31F05Orfeome Localization Data
UniProtKB/SwissProtQ9UTP060S ribosomal protein L30-2
ModBaseQ9UTP0Database of comparative protein structure models
STRINGQ9UTP0Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59485760S ribosomal protein L30
RefSeq mRNANM_001020286972h- 60S ribosomal protein L30 (rpl3002), mRNA
European Nucleotide ArchiveCAB54828.1ENA Protein Mapping
UniParcUPI0000132F9CUniProt Archive

Literature for rpl3002

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015