rpl3002 (SPAC1250.05)

Gene Standard Namerpl3002 Characterisation Statusbiological_role_inferred
Systematic IDSPAC1250.05 Feature Typeprotein coding
Synonymsrpl30, rpl30-2 Name Description
Product60S ribosomal protein L30 (predicted) Product Size117aa, 12.24 kDa
Genomic Location Chromosome I, 5095925-5095073 (853nt); CDS:5095810-5095211 (600nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000002998GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO:0006364rRNA processingISOSGD:S000002998GO_REF:0000024182
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0022625cytosolic large ribosomal subunitISOSGD:S000002998GO_REF:000002482
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpl3002ΔNullPECO:0000005, PECO:0000137PMID:236978063755

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002938normal mRNA level during vegetative growthTranscript expression level evidencerpl3002Δi (91-337)Not specifiedPMID:240813292
affecting rpl3002
FYPO:0002177viable vegetative cell with normal cell morphologyMicroscopyrpl3002ΔNullPECO:0000005, PECO:0000137PMID:236978063078
penetrance FYPO_EXT:0000001
Target Of
regulated by nab2 poly(A) binding protein Nab2 (predicted) PMID:24081329
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Start End Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01248 Pfam IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 23 115 7
PS00709 Prosite Patterns IPR022991 Ribosomal protein L30e, conserved site 34 58 2
PS00993 Prosite Patterns IPR022991 Ribosomal protein L30e, conserved site 90 110 2
PTHR11449 HMMPANTHER IPR000231 Ribosomal protein L30e 11 116 2
G3DSA:3.30.1330.30 Gene3D 17 115 10
SSF55315 SuperFamily 23 116 10
Low complexity (SEG) seg 2 14

View domain organization at Pfam

Protein Properties

Ave. residue weight 104.64 Da
Charge 11.00
Isoelectric point 10.40
Molecular weight 12.24 kDa
Number of residues 117

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00696phosphorylated residuePMID:195477441192
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
87093.72during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
13649.15during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
3.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
19during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
conserved in fungi4564
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3394

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
nab2poly(A) binding protein Nab2 (predicted) Affinity Capture-RNAPMID:24081329
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPAC1250.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1250.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1250.05 BioGRID Interaction Datasets
Expression Viewer SPAC1250.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1250.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1250.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1250.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1250.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1250.05 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1250.05 Cell Cycle Data
GEO SPAC1250.05 GEO profiles
PInt SPAC1250.05 Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene254266160S ribosomal protein L30
EntrezGene254266160S ribosomal protein L30
SPD / RIKEN31/31F05Orfeome Localization Data
UniProtKB/SwissProtQ9UTP060S ribosomal protein L30-2
ModBaseQ9UTP0Database of comparative protein structure models
StringQ9UTP0Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59485760S ribosomal protein L30
RefSeq mRNANM_001020286972h- 60S ribosomal protein L30 (rpl3002), mRNA
European Nucleotide ArchiveCAB54828ENA Protein Mapping
UniParcUPI0000132F9CUniProt Archive

Literature for rpl3002

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014