rpl3002 (SPAC1250.05)

Gene Standard Namerpl3002 ChromosomeI
Systematic IDSPAC1250.05 Gene Start5095925
Synonymsrpl30, rpl30-2 Gene End5095073
Product60S ribosomal protein L30 (predicted) Gene Length853
Feature Typeprotein coding CDS Start5095810
Name Description CDS End5095211
Characterisation Statusbiological_role_inferred CDS Length600

Ensembl Gene Location
  1. etd1
  2. win1
  3. rpl3002
  4. atl1
  5. ubc14
  6. sfc7
  7. SPNCRNA.1045
  8. mug95
  9. snf21
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001491viable vegetative cellMicroscopyrpl3002delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISOSGD:S000002998GO_REF:0000024
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006364rRNA processingISOSGD:S000002998GO_REF:0000024
GO:0006412translationISOSGD:S000002998GO_REF:0000024
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005829cytosolIDAPMID:16823372
GO:0022625cytosolic large ribosomal subunitISOSGD:S000002998GO_REF:0000024
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
150959255095548
250953015095073

References

Region Start End Reference
three_prime_UTR50952105095073PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01248 IPR004038 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 23 115 7
PS00709 IPR022991 Prosite Patterns Ribosomal protein L30e 34 58 2
PS00993 IPR022991 Prosite Patterns Ribosomal protein L30e 90 110 2
G3DSA:3.30.1330.30 Gene3D 17 115 10
SSF55315 SuperFamily 23 116 10
PTHR11449 IPR000231 hmmpanther Ribosomal protein L30e 1 117 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Protein Properties

Ave. residue weight 104.64 Da
Charge 11.00
Isoelectric point 10.40
Molecular weight 12.24 kDa
Number of residues 117
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide13649.15PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide87093.72PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide3.2PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide19PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
External References
Database Identifier Description
NBRP SPAC1250.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1250.05 Retrieval of eukaryotic orthologs
BioGrid SPAC1250.05 BioGRID Interaction Datasets
Bähler Lab SPAC1250.05 Cell Cycle Expression Profile
Bähler Lab SPAC1250.05 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1250.05 Pheromone response/mating expression profiles
Bähler Lab SPAC1250.05 Environmental stress expression profiles
Bähler Lab SPAC1250.05 Bähler Lab Transcriptome Viewer
Cyclebase SPAC1250.05 Cell Cycle Data
PInt SPAC1250.05 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1250.05 Entrez Gene
WikiGene254266160S ribosomal protein L30
Uniprot_genenameRPL30B
EntrezGene254266160S ribosomal protein L30
SPD / RIKEN31/31F05Orfeome Localization Data
UniProtKB/SwissProtQ9UTP060S ribosomal protein L30-2
ModBaseQ9UTP0Database of comparative protein structure models
Pfam Protein DomainsQ9UTP0Pfam Domain Arrangement
RefSeq PeptideNP_59485760S ribosomal protein L30
RefSeq mRNANM_001020286972h- 60S ribosomal protein L30 (rpl3002), mRNA
European Nucleotide ArchiveCAB54828ENA Protein Mapping
SPD / RIKEN31/31F05Orfeome Localization Data

Literature for rpl3002
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013