cid14 (SPAC12G12.13c)

Gene Standard Namecid14 ChromosomeI
Systematic IDSPAC12G12.13c Gene Start321764
Synonyms Gene End324129
Productpoly(A) polymerase Cid14 Gene Length2366
Feature Typeprotein coding CDS Start321924
Name Description CDS End323978
Characterisation Statuspublished CDS Length2055

Ensembl Gene Location
  1. SPNCRNA.636
  2. SPAC12G12.16c
  3. sif3
  4. SPNCRNA.637
  5. pfs2
  6. cid14
  7. SPNCRNA.638
  8. SPAC12G12.12
  9. SPAC12G12.11c
  10. wdr21
  11. SPAC12G12.09
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000029abnormal chromosome segregationno_name (unrecorded)unrecordedPMID:16478992
FYPO:0000051abnormal meiosisno_name (unrecorded)unrecordedPMID:16478992
FYPO:0000825increased RNA level during vegetative growthNorthern assay evidencecid14delta (deletion)deletionPMID:22139915
assayed_using SO:0001923
assayed_using SO:0001925Northern assay evidencecid14delta (deletion)deletionPMID:22139915
FYPO:0001317normal RNA level during vegetative growthNorthern assay evidencecid14delta (deletion)deletionPMID:22139915
assayed_using SO:0001924
assayed_using SO:0001926Northern assay evidencecid14delta (deletion)deletionPMID:22139915
FYPO:0002060viable vegetative cell populationMicroscopycid14delta (deletion)deletionPMID:20473289
no_name (unrecorded)unrecordedPMID:16478992
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAUniProtKB:KW-0694GO_REF:0000037
GO:0004652polynucleotide adenylyltransferase activityIMPPMID:16478992
GO:0005524ATP bindingIEAUniProtKB:KW-0067GO_REF:0000037
GO:0046872metal ion bindingIEAUniProtKB:KW-0479GO_REF:0000037
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0007000nucleolus organizationIMPPMID:16478992
GO:0016075rRNA catabolic processIGIdis3PMID:16478992
GO:0016077snoRNA catabolic processISOSGD:S000005475GO_REF:0000024
GO:0016078tRNA catabolic processISOSGD:S000005475GO_REF:0000024
GO:0031125rRNA 3'-end processingIGIdis3PMID:16478992
GO:0043630ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic processISOSGD:S000005475GO_REF:0000024
GO:0065007biological regulationNASGO_REF:0000051
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
IDAPMID:16478992
GO:0005730nucleolus
predominantlyIDAPMID:16478992
GO:0031499TRAMP complexIDAPMID:17512405
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1321764324129

References

Region Start End Reference
three_prime_UTR323979324129PMID:21511999
five_prime_UTR321764321923PMID:21511999
three_prime_UTR323979324129PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03828 IPR002058 Pfam PAP/25A-associated 434 492 6
PF01909 IPR002934 Pfam Nucleotidyl transferase domain 266 364 6
G3DSA:3.30.460.10 Gene3D 254 403 11
SSF81301 SuperFamily 224 391 11
SSF81631 SuperFamily 379 520 7
PTHR23092:SF13 hmmpanther 1 599 1
PTHR23092 hmmpanther 1 599 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517
PMID:19547744

Protein Properties

Ave. residue weight 114.47 Da
Charge 8.50
Isoelectric point 7.76
Molecular weight 78.30 kDa
Number of residues 684
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
deletion mutant expression profiling PMID:18025105
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide398.03PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide703.79PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.6PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.6PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
Pathway
DescriptionQualifierReference
Mad2-dependent checkpoint response PMID:16478992
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ago1argonaute Phenotypic SuppressionPMID:21892171
dcr1dicer Phenotypic EnhancementPMID:20178743
pab2poly(A) binding protein Pab2 Synthetic Growth DefectPMID:20129053
Phenotypic EnhancementPMID:21981922
Phenotypic SuppressionPMID:22965128
Phenotypic EnhancementPMID:20622014
SPBC577.04human THOC5 ortholog (predicted) Synthetic Growth DefectPMID:22965128
swi6HP1 family chromodomain protein Swi6 Phenotypic EnhancementPMID:22683269
ran1serine/threonine protein kinase Ran1 Phenotypic SuppressionPMID:16478992
bub1serine/threonine protein kinase Bub1 Synthetic LethalityPMID:16478992
mft1THO complex subunit 7 Mft1 (predicted) Synthetic Growth DefectPMID:22965128
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
rec24meiotic recombination protein Rec24 Affinity Capture-MSPMID:21436456
oga1Stm1 homolog Oga1 Affinity Capture-MSPMID:21436456
rps90140S ribosomal protein S9 Affinity Capture-MSPMID:20403971
rpl180260S ribosomal protein L18 (predicted) Affinity Capture-MSPMID:20403971
rpl80360S ribosomal protein L8 (predicted) Affinity Capture-MSPMID:20403971
rrs1ribosome biogenesis protein Rrs1 (predicted) Affinity Capture-MSPMID:21436456
rps90240S ribosomal protein S9 (predicted) Affinity Capture-MSPMID:20403971
rps160240S ribosomal protein S16 (predicted) Affinity Capture-MSPMID:20403971
tif33translation initiation factor eIF3c Affinity Capture-MSPMID:21436456
rpl210260S ribosomal protein L21 (predicted) Affinity Capture-MSPMID:20403971
rpl230260S ribosomal protein L23 Affinity Capture-MSPMID:20403971
rpl360160S ribosomal protein L36 Affinity Capture-MSPMID:20403971
rps260240S ribosomal protein S26 (predicted) Affinity Capture-MSPMID:20403971
rpl270260S ribosomal protein L27 (predicted) Affinity Capture-MSPMID:20403971
ppk9serine/threonine protein kinase Ppk9 (predicted) Affinity Capture-MSPMID:21436456
rpl210160S ribosomal protein L21 (predicted) Affinity Capture-MSPMID:20403971
rpl660S ribosomal protein L6 (predicted) Affinity Capture-MSPMID:20403971
rps220240S ribosomal protein S15a (predicted) Affinity Capture-MSPMID:20403971
rpl430160S ribosomal protein L37a (predicted) Affinity Capture-MSPMID:20403971
rpl320160S ribosomal protein L32 Affinity Capture-MSPMID:20403971
rps220140S ribosomal protein S15a (predicted) Affinity Capture-MSPMID:20403971
rps540S ribosomal protein S5 (predicted) Affinity Capture-MSPMID:20403971
rpl2660S ribosomal protein L26 (predicted) Affinity Capture-MSPMID:20403971
rps80140S ribosomal protein S8 (predicted) Affinity Capture-MSPMID:20403971
rps340S ribosomal protein S3 (predicted) Affinity Capture-MSPMID:20403971
SPAC4H3.07cprotein phosphatase Fmp31 (predicted) Affinity Capture-MSPMID:21436456
mlo3RNA binding protein Mlo3 Affinity Capture-WesternPMID:21436456
Affinity Capture-MS
rps10140S ribosomal protein S3a Affinity Capture-MSPMID:20403971
rpl10160S ribosomal protein L10a Affinity Capture-MSPMID:20403971
rpl3560S ribosomal protein L35 Affinity Capture-MSPMID:20403971
rps240240S ribosomal protein S24 (predicted) Affinity Capture-MSPMID:20403971
rps150240S ribosomal protein S15 (predicted) Affinity Capture-MSPMID:20403971
mtr4ATP-dependent RNA helicase, TRAMP complex subunit Mtr4 Affinity Capture-MSPMID:20403971
Affinity Capture-Western
Affinity Capture-MSPMID:21436456
SPBC365.04cRNA-binding protein, involved in ribosome biogenesis (predicted) Affinity Capture-MSPMID:21436456
SPAC227.02crRNA processing protein Rrp15 (predicted) Affinity Capture-MSPMID:21436456
SPBC4F6.14RNA-binding protein (predicted) Affinity Capture-MSPMID:21436456
rps140140S ribosomal protein S14 (predicted) Affinity Capture-MSPMID:20403971
smd2Sm snRNP core protein Smd2 Affinity Capture-MSPMID:21436456
rps110140S ribosomal protein S11 (predicted) Affinity Capture-MSPMID:20403971
sum3translation initiation RNA helicase Sum3 Affinity Capture-MSPMID:21436456
SPAC890.04cribosome biogenesis protein Ytm1 (predicted) Affinity Capture-MSPMID:21436456
rps250240S ribosomal protein S25 (predicted) Affinity Capture-MSPMID:20403971
rpl2260S ribosomal protein L22 (predicted) Affinity Capture-MSPMID:20403971
SPAC1093.04ctRNA nucleotidyltransferase (predicted) Affinity Capture-MSPMID:21436456
rps260140S ribosomal protein S26 (predicted) Affinity Capture-MSPMID:20403971
SPCC126.11cRNA-binding protein, rrm type Affinity Capture-MSPMID:21436456
tif212translation initiation factor eIF2 beta subunit (predicted) Affinity Capture-MSPMID:21436456
rpl340160S ribosomal protein L34 Affinity Capture-MSPMID:20403971
rps1340S ribosomal protein S13 Affinity Capture-MSPMID:20403971
SPBC4F6.13cWD repeat/BOP1NT protein (predicted) Affinity Capture-MSPMID:21436456
rpl3160S ribosomal protein L31 (predicted) Affinity Capture-MSPMID:20403971
rpl40160S ribosomal protein L4 (predicted) Affinity Capture-MSPMID:20403971
SPAC926.08cBrix domain protein Rpf2 (predicted) Affinity Capture-MSPMID:21436456
rpl80260S ribosomal protein L8 (predicted) Affinity Capture-MSPMID:20403971
rps240S ribosomal protein S2 (predicted) Affinity Capture-MSPMID:20403971
rpl70260S ribosomal protein L7 Affinity Capture-MSPMID:20403971
rps170140S ribosomal protein S17 (predicted) Affinity Capture-MSPMID:20403971
rpl1360S ribosomal protein L13 (predicted) Affinity Capture-MSPMID:20403971
SPBP8B7.20cRNA methyltransferase Nop2 (predicted) Affinity Capture-WesternPMID:20403971
Affinity Capture-MSPMID:21436456
rpl100160S ribosomal protein L10 Affinity Capture-MSPMID:20403971
SPCC18.05cnotchless-like protein (predicted) Affinity Capture-MSPMID:21436456
SPBC106.12cTHO complex subunit (predicted) Affinity Capture-MSPMID:21436456
spb1rRNA methyltransferase Spb1 (predicted) Affinity Capture-MSPMID:21436456
rpl1560S ribosomal protein L15 (predicted) Affinity Capture-MSPMID:20403971
rpl70160S ribosomal protein L7 Affinity Capture-MSPMID:20403971
sce3translation initiation factor (predicted) Affinity Capture-MSPMID:21436456
rpl30160S ribosomal protein L3 Affinity Capture-MSPMID:20403971
utp15U3 snoRNP protein Utp15 (predicted) Affinity Capture-MSPMID:21436456
rrp16rRNA processing protein Rrp16 (predicted) Affinity Capture-MSPMID:21436456
sec65signal recognition particle subunit Sec65 (predicted) Affinity Capture-MSPMID:21436456
mft1THO complex subunit 7 Mft1 (predicted) Co-localizationPMID:22965128
rpl240160S ribosomal protein L24 (predicted) Affinity Capture-MSPMID:20403971
rnp24RNA-binding protein Rnp24 Affinity Capture-MSPMID:21436456
rpl280160S ribosomal protein L27/L28 Affinity Capture-MSPMID:20403971
sum1translation initiation factor eIF3i Affinity Capture-MSPMID:21436456
rps10240S ribosomal protein S3a (predicted) Affinity Capture-MSPMID:20403971
tif51translation elongation factor eIF5A (predicted) Affinity Capture-MSPMID:21436456
brx1ribosome biogenesis protein Brx1 (predicted) Affinity Capture-MSPMID:21436456
SPCC1183.07U3 snoRNP-associated protein Rrp5 (predicted) Affinity Capture-MSPMID:21436456
rpl110160S ribosomal protein L11 (predicted) Affinity Capture-MSPMID:20403971
puf6Puf family RNA-binding protein Puf6 (predicted) Affinity Capture-MSPMID:21436456
rpl80160S ribosomal protein L8 (predicted) Affinity Capture-MSPMID:20403971
rpl230160S ribosomal protein L23 Affinity Capture-MSPMID:20403971
ebp2rRNA processing protein Ebp2 (predicted) Affinity Capture-MSPMID:21436456
nop12RNA-binding protein Nop12 (predicted) Affinity Capture-MSPMID:21436456
SPAC23G3.06U3 snoRNP protein Nop58 (predicted) Affinity Capture-MSPMID:21436456
rpl180160S ribosomal protein L18 Affinity Capture-MSPMID:20403971
rpl150260S ribosomal protein L15b (predicted) Affinity Capture-MSPMID:20403971
rpl270160S ribosomal protein L27 Affinity Capture-MSPMID:20403971
fib1fibrillarin, rRNA methyltransferase Affinity Capture-WesternPMID:20403971
rps300240S ribosomal protein S30 (predicted) Affinity Capture-MSPMID:20403971
tif32translation initiation factor eIF3a Affinity Capture-MSPMID:21436456
rps110240S ribosomal protein S11 (predicted) Affinity Capture-MSPMID:20403971
tif471translation initiation factor eIF4G Affinity Capture-MSPMID:21436456
fnx1vacuolar membrane amino acid uptake transporter Fnx1 Affinity Capture-MSPMID:21436456
SPBC577.04human THOC5 ortholog (predicted) Co-localizationPMID:22965128
gar1snoRNP pseudouridylase box H/ACA snoRNP complex protein Gar1 Affinity Capture-MSPMID:21436456
rps740S ribosomal protein S7 (predicted) Affinity Capture-MSPMID:20403971
SPCP1E11.08ribosome biogenesis protein Nsa2 (predicted) Affinity Capture-MSPMID:21436456
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-WesternPMID:20403971
Affinity Capture-MS
Affinity Capture-MSPMID:21436456
rpl280260S ribosomal protein L27/L28 Affinity Capture-MSPMID:20403971
rps60240S ribosomal protein S6 (predicted) Affinity Capture-MSPMID:20403971
rpl300160S ribosomal protein L30 (predicted) Affinity Capture-MSPMID:20403971
rps180240S ribosomal protein S18 (predicted) Affinity Capture-MSPMID:20403971
tef5translation elongation factor EF-1 beta subunit (eEF1B) Affinity Capture-MSPMID:21436456
SPBC16H5.08cribosome biogenesis ATPase, Arb family ABCF2-like (predicted) Affinity Capture-MSPMID:21436456
tif6translation initiation factor eIF6 Affinity Capture-MSPMID:21436456
rps240140S ribosomal protein S24 (predicted) Affinity Capture-MSPMID:20403971
rpl190160S ribosomal protein L19 Affinity Capture-MSPMID:20403971
rps180140S ribosomal protein S18 (predicted) Affinity Capture-MSPMID:20403971
sla1La protein homolog Affinity Capture-MSPMID:21436456
SPAC1486.09ribosome biogenesis protein Nob1 (predicted) Affinity Capture-MSPMID:21436456
rpl160260S ribosomal protein L13/L16 (predicted) Affinity Capture-MSPMID:20403971
gar2nucleolar protein required for rRNA processing Affinity Capture-WesternPMID:20403971
Co-localizationPMID:16478992
rps300140S ribosomal protein S30 (predicted) Affinity Capture-MSPMID:20403971
rpl110260S ribosomal protein L11 (predicted) Affinity Capture-MSPMID:20403971
SPBC16H5.12cconserved fungal protein Affinity Capture-MSPMID:21436456
SPCC1827.05cnucleolar RNA-binding protein NIFK (predicted) Affinity Capture-MSPMID:21436456
rpl860S ribosomal protein L7a/L8 (predicted) Affinity Capture-MSPMID:20403971
nog1GTP binding protein Nog1 (predicted) Affinity Capture-WesternPMID:20403971
Affinity Capture-MSPMID:21436456
srp2mRNA export factor Srp2 Affinity Capture-MSPMID:21436456
dbp2ATP-dependent RNA helicase Dbp2 Affinity Capture-WesternPMID:20403971
Affinity Capture-MSPMID:21436456
SPAC10F6.08cHMG box protein Affinity Capture-MSPMID:21436456
SPAC6F6.03cribosome export GTPase (predicted) Affinity Capture-WesternPMID:20403971
Affinity Capture-MSPMID:21436456
rpl200260S ribosomal protein L20 (predicted) Affinity Capture-MSPMID:20403971
rps160140S ribosomal protein S16 (predicted) Affinity Capture-MSPMID:20403971
rpl40260S ribosomal protein L4 (predicted) Affinity Capture-MSPMID:20403971
rpl200160S ribosomal protein L20a (predicted) Affinity Capture-MSPMID:20403971
mmi1YTH family RNA binding protein Mmi1 Affinity Capture-MSPMID:21436456
far10SIP/FAR complex FHA domain subunit Far10/Csc1 Affinity Capture-MSPMID:21436456
rpl250160S ribosomal protein L25 (predicted) Affinity Capture-MSPMID:20403971
rpl1460S ribosomal protein L14 (predicted) Affinity Capture-MSPMID:20403971
rps140240S ribosomal protein S14 (predicted) Affinity Capture-MSPMID:20403971
tif213translation initiation factor eIF2 gamma subunit (predicted) Affinity Capture-MSPMID:21436456
tif211translation initiation factor eIF2 alpha subunit Affinity Capture-MSPMID:21436456
rpl370360S ribosomal protein L37 (predicted) Affinity Capture-MSPMID:20403971
rpl4460S ribosomal protein L28/L44 (predicted) Affinity Capture-MSPMID:20403971
grn1GTPase Grn1 Affinity Capture-MSPMID:21436456
SPAC8F11.04U3 snoRNP-associated protein Cic1/Utp30 family (predicted) Affinity Capture-MSPMID:21436456
Contact Curators
External References
Database Identifier Description
NBRP SPAC12G12.13c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC12G12.13c Retrieval of eukaryotic orthologs
BioGrid SPAC12G12.13c BioGRID Interaction Datasets
Bähler Lab SPAC12G12.13c Cell Cycle Expression Profile
Bähler Lab SPAC12G12.13c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC12G12.13c Pheromone response/mating expression profiles
Bähler Lab SPAC12G12.13c Environmental stress expression profiles
Bähler Lab SPAC12G12.13c Bähler Lab Transcriptome Viewer
Cyclebase SPAC12G12.13c Cell Cycle Data
PInt SPAC12G12.13c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC12G12.13c Entrez Gene
WikiGene3361384poly(A) polymerase Cid14
Uniprot_genenameCID14
EntrezGene3361384poly(A) polymerase Cid14
IntEnz2.7.7.1
SPD / RIKEN26/26B12Orfeome Localization Data
UniProtKB/SwissProtQ9UTN3Poly(A) RNA polymerase cid14
ModBaseQ9UTN3Database of comparative protein structure models
Pfam Protein DomainsQ9UTN3Pfam Domain Arrangement
RefSeq PeptideNP_001018181poly(A) polymerase Cid14
RefSeq mRNANM_001018285972h- poly(A) polymerase Cid14 (cid14), mRNA
European Nucleotide ArchiveCAI79317ENA Protein Mapping
UniParcUPI00005053CCUniProt Archive

Literature for cid14
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013