Tf2-7 (SPAC13D1.01c)


Gene Standard NameTf2-7 Characterisation Statustransposon
Systematic IDSPAC13D1.01c Feature Typeprotein coding
Synonyms Name Description
Productretrotransposable element/transposon Tf2-type Product Size1333aa, 154.96 kDa
Genomic Location Chromosome I, 5195702-5191060 (4643nt); CDS:5195145-5191144 (4002nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003677DNA bindingIEAUniProtKB-KW:KW-0238GO_REF:0000037385
GO:0003887DNA-directed DNA polymerase activityIEAUniProtKB-KW:KW-0239GO_REF:000003729
GO:0003723RNA bindingIEAUniProtKB-KW:KW-0694GO_REF:0000037627
GO:0003964RNA-directed DNA polymerase activityIEAUniProtKB-KW:KW-0695GO_REF:000003714
GO:0004190aspartic-type endopeptidase activityIEAUniProtKB-KW:KW-0064GO_REF:000003715
GO:0004519endonuclease activityIEAUniProtKB-KW:KW-0255GO_REF:000003776
GO:0046872metal ion bindingIEAUniProtKB-KW:KW-0479GO_REF:0000037747
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0015074DNA integrationIEAUniProtKB-KW:KW-0229GO_REF:000003711
GO:0006310DNA recombinationIEAUniProtKB-KW:KW-0233GO_REF:0000037109
GO:0006278RNA-dependent DNA replicationIEAIPR000477GO_REF:000000216
GO:0006508proteolysisIEAUniProtKB-KW:KW-0645GO_REF:0000037260
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
151957025191060

UTRs

Region Start End Reference
three_prime_UTR51911435191060PMID:21511999
five_prime_UTR51957025195146PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF12382 Pfam IPR024648 Peptidase A2E, retrotransposon 219 355 13
PF00665 Pfam IPR001584 Integrase, catalytic core 981 1094 13
PF00078 Pfam IPR000477 Reverse transcriptase domain 455 615 15
PS00141 Prosite Patterns IPR001969 Aspartic peptidase, active site 268 279 14
PS50994 Prosite Profiles IPR001584 Integrase, catalytic core 979 1138 13
PS50878 Prosite Profiles IPR000477 Reverse transcriptase domain 436 615 15
PTHR10178 HMMPANTHER 1 1329 13
PTHR10178:SF168 HMMPANTHER 1 1329 13
G3DSA:3.30.70.270 Gene3D 536 617 16
G3DSA:3.30.420.10 Gene3D 979 1131 32
G3DSA:3.10.10.10 Gene3D 404 535 13
SSF50630 SuperFamily IPR021109 266 332 15
SSF53098 SuperFamily IPR012337 976 1135 34
SSF56672 SuperFamily 377 818 24
Coil ncoils Rabaptin coiled-coil domain 582 603 975
Low complexity (SEG) seg 874 880

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000992Tf2-type transposonTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000992

Protein Properties

Ave. residue weight 116.25 Da
Charge 55.50
Isoelectric point 9.60
Molecular weight 154.96 kDa
Number of residues 1333
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.057during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
0.49during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
0.21during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
1during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Orthologs

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC13D1.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC13D1.01c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC13D1.01c BioGRID Interaction Datasets
Expression Viewer SPAC13D1.01c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC13D1.01c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC13D1.01c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC13D1.01c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC13D1.01c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC13D1.01c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC13D1.01c Cell Cycle Data
GEO SPAC13D1.01c GEO profiles
PInt SPAC13D1.01c Protein-Protein Interaction Predictor (Bähler Lab)
EntrezGene2542763retrotransposable element
EntrezGene2542903retrotransposable element
WikiGene2542763retrotransposable element
WikiGene2542903retrotransposable element
UniProtKB/SwissProtQ9C0R2Retrotransposable element Tf2 155 kDa protein type 2
ModBaseQ9C0R2Database of comparative protein structure models
StringQ9C0R2Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594897retrotransposable element
RefSeq PeptideNP_594898retrotransposable element
RefSeq mRNANM_001020326972h- retrotransposable element (Tf2-7), mRNA
RefSeq mRNANM_001020327972h- retrotransposable element (Tf2-8), mRNA
Uniprot/SPTREMBLQ9UTF1Tf2 type transposon
European Nucleotide ArchiveCAB59613ENA Protein Mapping
European Nucleotide ArchiveCAC37430ENA Protein Mapping
European Nucleotide ArchiveCAC37431ENA Protein Mapping
UniParcUPI000013529AUniProt Archive

Literature for Tf2-7

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014