Tf2-7 (SPAC13D1.01c)

Gene Standard NameTf2-7 ChromosomeI
Systematic IDSPAC13D1.01c Gene Start5195702
Synonyms Gene End5191060
Productretrotransposable element/transposon Tf2-type Gene Length4643
Feature Typeprotein coding CDS Start5195145
Name Description CDS End5191144
Characterisation Statustransposon CDS Length4002

Ensembl Gene Location
  1. sec74
  2. SPAPJ691.02
  3. SPAPJ691.03
  4. Tf2-7
  5. Tf2-8
  6. SPNCRNA.1058
  7. SPNCRNA.1059
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAIPR000477GO_REF:0000002
GO:0003964RNA-directed DNA polymerase activityIEAIPR000477GO_REF:0000002
GO:0004190aspartic-type endopeptidase activityIEAIPR001969GO_REF:0000002
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0006278RNA-dependent DNA replicationIEAIPR000477GO_REF:0000002
GO:0006508proteolysisIEAIPR001969GO_REF:0000002
GO:0015074DNA integrationIEAIPR001584GO_REF:0000002
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
151957025191060

References

Region Start End Reference
three_prime_UTR51911435191060PMID:21511999
three_prime_UTR51911435191060PMID:21511999
five_prime_UTR51957025195146PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00078 IPR000477 Pfam Reverse transcriptase 455 615 15
PF00665 IPR001584 Pfam Integrase, catalytic core 981 1094 13
PF12382 IPR024648 Pfam Peptidase A2E, retrotransposon 219 355 13
PS50994 IPR001584 Prosite Profiles Integrase, catalytic core 979 1138 13
PS50878 IPR000477 Prosite Profiles Reverse transcriptase 436 615 15
PS00141 IPR001969 Prosite Patterns Peptidase aspartic, active site 268 279 14
G3DSA:3.30.70.270 Gene3D 536 617 16
G3DSA:3.30.420.10 Gene3D 979 1131 31
G3DSA:3.10.10.10 Gene3D 404 535 13
SSF50630 IPR021109 SuperFamily 266 332 15
SSF53098 IPR012337 SuperFamily 976 1135 34
SSF56672 SuperFamily 377 818 24
Coil ncoils Rabaptin coiled-coil domain 582 603 974
PTHR10178 hmmpanther 6 1267 13
PTHR10178:SF14 hmmpanther 6 1267 13

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000992Tf2-type transposonTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000992

Protein Properties

Ave. residue weight 116.25 Da
Charge 55.50
Isoelectric point 9.60
Molecular weight 154.96 kDa
Number of residues 1333
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.49PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.057PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide0.21PMID:23101633
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External References
Database Identifier Description
NBRP SPAC13D1.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC13D1.01c Retrieval of eukaryotic orthologs
BioGrid SPAC13D1.01c BioGRID Interaction Datasets
Bähler Lab SPAC13D1.01c Cell Cycle Expression Profile
Bähler Lab SPAC13D1.01c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC13D1.01c Pheromone response/mating expression profiles
Bähler Lab SPAC13D1.01c Environmental stress expression profiles
Bähler Lab SPAC13D1.01c Bähler Lab Transcriptome Viewer
Cyclebase SPAC13D1.01c Cell Cycle Data
PInt SPAC13D1.01c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC13D1.01c Entrez Gene
EntrezGene2542763retrotransposable element
EntrezGene2542903retrotransposable element
Uniprot_genenameSPAC1F2.03
Uniprot_genenameTF2-7
WikiGene2542763retrotransposable element
WikiGene2542903retrotransposable element
UniProtKB/SwissProtQ9C0R2Retrotransposable element Tf2 155 kDa protein type 2
ModBaseQ9C0R2Database of comparative protein structure models
Pfam Protein DomainsQ9C0R2Pfam Domain Arrangement
RefSeq PeptideNP_594897retrotransposable element
RefSeq PeptideNP_594898retrotransposable element
RefSeq mRNANM_001020326972h- retrotransposable element (Tf2-7), mRNA
RefSeq mRNANM_001020327972h- retrotransposable element (Tf2-8), mRNA
Uniprot/SPTREMBLQ9UTF1Tf2 type transposon
European Nucleotide ArchiveCAB59613ENA Protein Mapping
European Nucleotide ArchiveCAC37430ENA Protein Mapping
European Nucleotide ArchiveCAC37431ENA Protein Mapping
UniParcUPI000013529AUniProt Archive

Literature for Tf2-7
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013