ptr6 (SPAC13F5.02c)

Gene Standard Nameptr6 Characterisation Statuspublished
Systematic IDSPAC13F5.02c Feature Typeprotein coding
Synonymstaf7 Name Description
Producttranscription factor TFIID complex subunit Taf7 Product Size393aa, 45.00 kDa
Genomic Location Chromosome I, 2173796-2172410 (1387nt); CDS:2173752-2172530 (1223nt)

Ensembl Gene Location
GO Molecular Function
GO Biological Process
Term NameCount
poly(A)+ mRNA export from nucleus16
Annotation ExtensionEvidenceWith/FromReference
regulation of transcription from RNA polymerase II promoter291
Annotation ExtensionEvidenceWith/FromReference
transcription initiation from RNA polymerase II promoter36
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
transcription factor TFIID complex16
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyptr6ΔNullPECO:0000005, PECO:0000137PMID:236978061338

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000311inviable after spore germination with normal, unseptated germ tube morphology237
penetrance FYPO_EXT:0000003Microscopyptr6ΔNullPECO:0000005, PECO:0000137PMID:23697806
FYPO:0002151inviable spore465
penetrance FYPO_EXT:0000001Microscopyptr6ΔNullPECO:0000005, PECO:0000137PMID:23697806
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Coordinates Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04658 Pfam IPR006751 TAFII55 protein, conserved region 72 223 1
PTHR12228 HMMPANTHER 1 388 2
PTHR12228:SF0 HMMPANTHER 1 388 1
Coil ncoils Rabaptin coiled-coil domain 204 225 968
Coil ncoils Rabaptin coiled-coil domain 302 340 968

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.50 Da
Charge -21.50
Isoelectric point 4.57
Molecular weight 45.00 kDa
Number of residues 393

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
present during cellular response to thiabendazole
present during cellular response to thiabendazoleIDAS308PMID:18257517
present during mitotic M phaseexperimental evidenceS16PMID:21712547
present during mitotic M phaseexperimental evidenceS18PMID:21712547
MOD:00047O-phospho-L-threonineexperimental evidenceT20PMID:21712547692
present during mitotic M phase
MOD:00696phosphorylated residueNASPMID:182575171922
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1188.2during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
6299.86during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
4.3during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
1.4during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
predominantly single copy (one to one)3092
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
taf5SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5 Affinity Capture-WesternPMID:11972332
Affinity Capture-WesternPMID:11279037
taf73transcription factor TFIID complex subunit Taf5-like Affinity Capture-WesternPMID:11972332
Affinity Capture-WesternPMID:11279037
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
pir2zf-C2H2 type zinc finger protein, implicated in RNAi (predicted) Affinity Capture-MSPMID:24713849
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
External References
Database Identifier Description
NBRP SPAC13F5.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC13F5.02c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC13F5.02c BioGRID Interaction Datasets
Expression Viewer SPAC13F5.02c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC13F5.02c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC13F5.02c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC13F5.02c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC13F5.02c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC13F5.02c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC13F5.02c Cell Cycle Data
GEO SPAC13F5.02c GEO profiles
PInt SPAC13F5.02c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC13F5.02c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC13F5.02c Fission yeast phenotypic data & analysis
SPD / RIKEN22/22B07Orfeome Localization Data
UniProtKB/SwissProtO13701Transcription initiation factor TFIID subunit 7
ModBaseO13701Database of comparative protein structure models
STRINGO13701Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593650transcription factor TFIID complex subunit Taf7
RefSeq mRNANM_001019082972h- transcription factor TFIID complex subunit Taf7 (ptr6), mRNA
European Nucleotide ArchiveBAA32487.1ENA Protein Mapping
European Nucleotide ArchiveCAB11765.1ENA Protein Mapping
UniParcUPI00001367E9UniProt Archive

Literature for ptr6

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014