ptr6 (SPAC13F5.02c)

Gene Standard Nameptr6 ChromosomeI
Systematic IDSPAC13F5.02c Gene Start2173796
Synonymstaf7 Gene End2172410
Producttranscription factor TFIID complex subunit Taf7 Gene Length1387
Feature Typeprotein coding CDS Start2173752
Name Description CDS End2172530
Characterisation Statuspublished CDS Length1223

Ensembl Gene Location
  1. plo1
  2. mdm28
  3. msh1
  4. ptr6
  5. gld1
  6. SPNCRNA.801
  7. SPAC13F5.04c
  8. SPAC13F5.05
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001489inviable vegetative cellMicroscopyptr6delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0000991core RNA polymerase II binding transcription factor activityISOSGD:S000004840GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006355regulation of transcription, DNA-dependentIEAUniProtKB:KW-0805GO_REF:0000037
GO:0006367transcription initiation from RNA polymerase II promoterISOSGD:S000004840GO_REF:0000024
GO:0016973poly(A)+ mRNA export from nucleus
requiredIMPPMID:10388808
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:10388808
IDAPMID:16823372
GO:0005669transcription factor TFIID complexIDAPMID:11972332
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121737962173425
221733832172410

References

Region Start End Reference
three_prime_UTR21725292172410PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04658 IPR006751 Pfam TAFII55 protein, conserved region 72 223 1
Coil ncoils Rabaptin coiled-coil domain 204 225 974
Coil ncoils Rabaptin coiled-coil domain 302 340 974
PTHR12228:SF0 hmmpanther 1 393 1
PTHR12228 hmmpanther 1 393 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517

Protein Properties

Ave. residue weight 114.50 Da
Charge -21.50
Isoelectric point 4.57
Molecular weight 45.00 kDa
Number of residues 393
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide1188.2PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide6299.86PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.4PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide4.3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
taf5SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5 Affinity Capture-WesternPMID:11279037
Affinity Capture-WesternPMID:11972332
taf73transcription factor TFIID complex subunit Taf5-like Affinity Capture-WesternPMID:11279037
Affinity Capture-WesternPMID:11972332
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External References
Database Identifier Description
NBRP SPAC13F5.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC13F5.02c Retrieval of eukaryotic orthologs
BioGrid SPAC13F5.02c BioGRID Interaction Datasets
Bähler Lab SPAC13F5.02c Cell Cycle Expression Profile
Bähler Lab SPAC13F5.02c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC13F5.02c Pheromone response/mating expression profiles
Bähler Lab SPAC13F5.02c Environmental stress expression profiles
Bähler Lab SPAC13F5.02c Bähler Lab Transcriptome Viewer
Cyclebase SPAC13F5.02c Cell Cycle Data
PInt SPAC13F5.02c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC13F5.02c Entrez Gene
WikiGene2542822transcription factor TFIID complex subunit Taf7
Uniprot_genenameTAF7
EntrezGene2542822transcription factor TFIID complex subunit Taf7
SPD / RIKEN22/22B07Orfeome Localization Data
UniProtKB/SwissProtO13701Transcription initiation factor TFIID subunit 7
ModBaseO13701Database of comparative protein structure models
Pfam Protein DomainsO13701Pfam Domain Arrangement
RefSeq PeptideNP_593650transcription factor TFIID complex subunit Taf7
RefSeq mRNANM_001019082972h- transcription factor TFIID complex subunit Taf7 (ptr6), mRNA
European Nucleotide ArchiveBAA32487ENA Protein Mapping
European Nucleotide ArchiveCAB11765ENA Protein Mapping
SPD / RIKEN22/22B07Orfeome Localization Data

Literature for ptr6
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013