tim8 (SPAC13G6.04)


Gene Standard Nametim8 Characterisation Statusbiological role inferred
Systematic IDSPAC13G6.04 Feature Typeprotein coding
Synonyms Name Description
ProductTIM22 inner membrane protein import complex subunit Tim8 (predicted) Product Size87aa, 9.99 kDa
Genomic Location Chromosome I, 180272-181069 (798nt); CDS:180423-180911 (489nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
metal ion binding751
Annotation ExtensionEvidenceWith/FromReference
protein transporter activity40
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
protein import into mitochondrial inner membrane12
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
mitochondrial intermembrane space30
Annotation ExtensionEvidenceWith/FromReference
mitochondrial intermembrane space protein transporter complex4
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationtim8Δ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologytim8Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons180272..180528, 180586..180721, 180890..181069
Intron180529..180585, 180722..180889
mRNA180272..181069
5' UTR180272..180422PMID:21511999
CDS180423..180528, 180586..180721, 180890..180911
3' UTR180912..181069PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF02953 Pfam IPR004217 Tim10/DDP family zinc finger 22 83 4
1.10.287.810 Gene3D IPR004217 Tim10/DDP family zinc finger 25 83 4
SSF144122 SuperFamily IPR004217 Tim10/DDP family zinc finger 31 84 4

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.80 Da
Charge -1.00
Codon Adaptation Index 0.45
Isoelectric point 5.71
Molecular weight 9.99 kDa
Number of residues 87
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for tim8 (SPAC13G6.04)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
36581during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
31199during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
31735.3during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
28754during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
22458.05during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.7during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.25during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Disease Association
DescriptionQualifierReferenceCount
dystonia-deafness syndrome1
deafness3
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:18488015434
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2506
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC13G6.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC13G6.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC13G6.04 BioGRID Interaction Datasets
Expression Viewer SPAC13G6.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC13G6.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC13G6.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC13G6.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC13G6.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC13G6.04 Transcriptome Viewer (Bähler Lab)
GEO SPAC13G6.04 GEO profiles
PInt SPAC13G6.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC13G6.04 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC13G6.04 Fission yeast phenotypic data & analysis
Cyclebase SPAC13G6.04.1 Cell Cycle Data
SPD / RIKEN42/42A06Orfeome Localization Data
RefSeq PeptideNP_592830TIM22 inner membrane protein import complex subunit Tim8 (predicted)
RefSeq mRNANM_001018231972h- TIM22 inner membrane protein import complex subunit Tim8 (predicted) (tim8), mRNA

Literature for tim8

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016