SPAC1527.03

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1527.03 Gene Start4384450
Synonyms Gene End4386950
ProductRNA-binding protein (predicted) Gene Length2501
Feature Typeprotein coding CDS Start4384659
Name Description CDS End4386086
Characterisation Statusbiological_role_inferred CDS Length1428

Ensembl Gene Location
  1. mok11
  2. sft2
  3. SPAC1527.03
  4. sec72
  5. SPAC30.02c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC1527.03delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingISOSGD:S000000542GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000000542GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmISOSGD:S000002923GO_REF:0000024
GO:0005829cytosolIDAPMID:16823372
GO:0005844polysomeISOSGD:S000000542GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
143844504386950

References

Region Start End Reference
three_prime_UTR43860874386950PMID:21511999
three_prime_UTR43860874386950PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF05383 IPR006630 Pfam RNA-binding protein Lupus La 330 386 2
SM00715 IPR006630 SMART RNA-binding protein Lupus La 323 406 2
PS50961 IPR006630 Prosite Profiles RNA-binding protein Lupus La 319 408 2
G3DSA:1.10.10.10 IPR011991 Gene3D 326 409 43
SSF46785 SuperFamily 320 414 49
PTHR22792 hmmpanther 74 465 2
PTHR22792:SF17 hmmpanther 74 465 1

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Protein Properties

Ave. residue weight 112.07 Da
Charge 17.00
Isoelectric point 9.52
Molecular weight 53.23 kDa
Number of residues 475
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide7245.64PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide5987.73PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.6PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.48PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
SPCC162.11curidine kinase/uracil phosphoribosyltransferase (predicted) Positive GeneticPMID:22681890
sre2membrane-tethered transcription factor (predicted) Negative GeneticPMID:21504829
Negative GeneticPMID:22681890
epe1Jmjc domain chromatin associated protein Epe1 Positive GeneticPMID:22681890
atg1autophagy and CVT pathway serine/threonine protein kinase Atg1 Positive GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Positive GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
tas3RITS complex subunit 3 Positive GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
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External References
Database Identifier Description
NBRP SPAC1527.03 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1527.03 Retrieval of eukaryotic orthologs
BioGrid SPAC1527.03 BioGRID Interaction Datasets
Bähler Lab SPAC1527.03 Cell Cycle Expression Profile
Bähler Lab SPAC1527.03 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1527.03 Pheromone response/mating expression profiles
Bähler Lab SPAC1527.03 Environmental stress expression profiles
Bähler Lab SPAC1527.03 Bähler Lab Transcriptome Viewer
Cyclebase SPAC1527.03 Cell Cycle Data
PInt SPAC1527.03 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1527.03 Entrez Gene
WikiGene2541645RNA-binding protein
EntrezGene2541645RNA-binding protein
SPD / RIKEN21/21H12Orfeome Localization Data
UniProtKB/SwissProtQ9P6K0Uncharacterized HTH La-type RNA-binding protein C1527.03
ModBaseQ9P6K0Database of comparative protein structure models
Pfam Protein DomainsQ9P6K0Pfam Domain Arrangement
RefSeq PeptideNP_594554RNA-binding protein
RefSeq mRNANM_001019983972h- RNA-binding protein (SPAC1527.03), mRNA
European Nucleotide ArchiveCAB90798ENA Protein Mapping
UniParcUPI0000069C08UniProt Archive

Literature for SPAC1527.03
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013