rho4 (SPAC16A10.04)

Synonyms ChromosomeI
ProductRho family GTPase Rho4 Gene Start3086938
Feature Typeprotein coding Gene End3088619
Name Description CDS Start3087038
Characterisation Statuspublished CDS End3088044

Ensembl Gene Location
SPAC16A10.01 SPAC16A10.03c sub1 ter1 SPNCRNA.884 SPATRNALYS.05 SPNCRNA.215 > rho4 < dad1 nse2 taz1 SPNCRNA.885 mug74 med13
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130869383087071
230871273087168
330872303087276
430873843087587
530877043087838
630878953088619

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00071 Pfam Small GTPase superfamily 16 185 177 18
52540 Superfamily 10 188 145.5 295
SM00174 Smart Small GTPase superfamily, Rho type 17 191 399.7 6
PS51420 PROSITE Small GTPase superfamily, Rho type 8 189 26.463 6
PR00449 Prints Small GTPase superfamily 119 132 48.69 19
PR00449 Prints Small GTPase superfamily 57 79 42.18 19
PR00449 Prints Small GTPase superfamily 38 54 28.55 19
PR00449 Prints Small GTPase superfamily 15 36 49.26 19
PR00449 Prints Small GTPase superfamily 166 188 34.23 19
TIGR00231 Tigrfam Small GTP-binding protein domain 12 186 99.5 33


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00437farnesylated residueTemporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00437

Protein Properties

Ave. residue weight 110.38 Da
Charge 3.50
Isoelectric point 8.26
Molecular weight 22.41 kDa
Number of residues 203
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viable
Temporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124
FYPO:0000223elongated, multiseptate cellsTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000223

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0000226microtubule cytoskeleton organizationIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000226
GO:0008360regulation of cell shapeIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0008360
GO:0030994primary cell septum disassemblyTASTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0030994
GO:0032955regulation of barrier septum formationIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0032955
GO:0032956regulation of actin cytoskeleton organizationIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0032956
GO:0032956regulation of actin cytoskeleton organizationIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0032956

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0000935barrier septumIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000935
GO:0005938cell cortexIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005938

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0003924GTPase activityTASTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0003924
GO:0005525GTP bindingIC GO:0003924GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005525
IEAGO_REF:0000002
IEAGO_REF:0000004

Warning

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DescriptionSourceAll Genes
gene structure updatedTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Protein Family

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DescriptionSourceAll Genes
Rho familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000741

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
sid2NDR kinase Sid2 Synthetic Growth Defect
agn1glucan endo-1,3-alpha-glucosidase Agn1 Dosage Rescue
eng1endo-1,3-beta-glucanase Eng1 Dosage Rescue
nda3tubulin beta Nda3 Synthetic Growth Defect

Physical Interactions from BioGRID

Gene Feature Evidence Source
scd1RhoGEF Scd1 Affinity Capture-Western
rgf3RhoGEF Rgf3 Co-localization

External References

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Database Identifier Description
NBRP SPAC16A10.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC16A10.04 Retrieval of eukaryotic orthologs
BioGrid SPAC16A10.04 BioGRID Interaction Datasets
Bähler Lab SPAC16A10.04 Cell Cycle Expression Profile
Bähler Lab SPAC16A10.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC16A10.04 Pheromone response/mating expression profiles
Bähler Lab SPAC16A10.04 Environmental stress expression profiles
Bähler Lab SPAC16A10.04 Bähler Lab Transcriptome Viewer
Cyclebase SPAC16A10.04 Cell Cycle Data
Entrez Gene SPAC16A10.04 Link to Entrez Gene
SPD / RIKEN16/16F09Orfeome Localization Data
UniProtKB/SwissProtQ874R1GTP-binding protein rho4
ArrayExpressQ874R1Link to ArrayExpress
RefSeq PeptideNP_001018257Rho family GTPase Rho4
RefSeq mRNANM_001019469972h- Rho family GTPase Rho4 (rho4), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAD86931ENA Protein Mapping
UniParcUPI00002317A8UniProt Archive

Literature for rho4

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Search: UK PMC or PubMed