cph1 (SPAC16C9.05)

Gene Standard Namecph1 ChromosomeI
Systematic IDSPAC16C9.05 Gene Start799341
Synonyms Gene End800981
ProductClr6 histone deacetylase associated PHD protein-1 Cph1 Gene Length1641
Feature Typeprotein coding CDS Start799550
Name Description CDS End800764
Characterisation Statuspublished CDS Length1215

Ensembl Gene Location
  1. SPNCRNA.686
  2. SPAC16C9.02c
  3. nmd3
  4. mot2
  5. cph1
  6. SPNCRNA.687
  7. upf1
  8. pom2
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000096sensitive to cadmiumCell growth assaycph1delta (deletion)deletionPECO:0000012PMID:18684775
FYPO:0001491viable vegetative cellMicroscopycph1delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0008270zinc ion bindingIEAIPR001965GO_REF:0000002
GO:0019787small conjugating protein ligase activityISMIPR001965GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006338chromatin remodelingIPIGO:0016575PMID:19040720
GO:0006368transcription elongation from RNA polymerase II promoterISOSGD:S000004680GO_REF:0000024
GO:0016575histone deacetylationISOSGD:S000004680GO_REF:0000024
GO:0071276cellular response to cadmium ionIMPPMID:18684775
GO:0071585detoxification of cadmium ionIMPPMID:18684775
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0032221Rpd3S complexIDAPMID:19040720
IDAPMID:17450151
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1799341800981

References

Region Start End Reference
five_prime_UTR799341799549PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00628 IPR019787 Pfam Zinc finger, PHD-finger 119 164 15
SM00249 IPR001965 SMART Zinc finger, PHD-type 119 164 19
PS50016 IPR019787 Prosite Profiles Zinc finger, PHD-finger 117 166 15
PS01359 IPR019786 Prosite Patterns Zinc finger, PHD-type, conserved site 120 163 19
G3DSA:3.30.40.10 IPR013083 Gene3D 101 172 84
SSF57903 IPR011011 SuperFamily 112 174 25
PTHR25462 hmmpanther 32 270 2
PTHR25462:SF4 hmmpanther 32 270 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000137zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137
PBO:0000447zf-PHD fingerTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000447

Protein Properties

Ave. residue weight 111.35 Da
Charge 16.00
Isoelectric point 8.48
Molecular weight 44.98 kDa
Number of residues 404
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide2670.7PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.51PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide2.6PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
but1neddylation pathway protein But1 Negative GeneticPMID:22681890
Positive GeneticPMID:18818364
ypa1protein phosphatase type 2A regulator, PTPA family Ypa1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
yox1MBF complex negative regulatory component Yox1 Negative GeneticPMID:22681890
rrg9mitochondrial genome maintenance protein Rrg9 (predicted) Negative GeneticPMID:22681890
lem2LEM domain protein Heh1/Lem2 Negative GeneticPMID:22681890
clr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
fio1iron transport multicopper oxidase Fio1 Negative GeneticPMID:22681890
atb2tubulin alpha 2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
nup40nucleoporin Nup40 Negative GeneticPMID:18818364
SPBC1A4.04sequence orphan Positive GeneticPMID:22681890
exg3glucan 1,3-beta-glucosidase Exg3 Negative GeneticPMID:22681890
SPCC1682.08cRNA-binding protein Mcp2 Negative GeneticPMID:22681890
psh3ER chaperone SHR3 homologue Psh3 Positive GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
mcl1DNA polymerase alpha accessory factor Mcl1 Negative GeneticPMID:22681890
Positive GeneticPMID:18818364
SPAC1610.02cmitochondrial ribosomal protein subunit L1 (predicted) Negative GeneticPMID:22681890
hta1histone H2A alpha Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
rpl210260S ribosomal protein L21 (predicted) Negative GeneticPMID:22681890
nap1nucleosome assembly protein Nap1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ase1antiparallel microtubule cross-linking factor Ase1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
bdf1Swr1 complex bromodomain subunit Brf1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
mgr2mitochondrial membrane protein Mgr2 (predicted) Negative GeneticPMID:22681890
set11ribosomal protein lysine methyltransferase Set11 Negative GeneticPMID:22681890
vps13achorein homolog (predicted) Negative GeneticPMID:22681890
caf1CCR4-Not complex CAF1 family ribonuclease subunit Caf1 Negative GeneticPMID:18818364
amk2AMP-activated protein kinase beta subunit Amk2 Positive GeneticPMID:18818364
mrc1mediator of replication checkpoint 1 Negative GeneticPMID:18818364
zrg17cation diffusion family zinc membrane transporter Zrg17 Negative GeneticPMID:22681890
rex3exonuclease Rex3 (predicted) Negative GeneticPMID:22681890
SPBC1703.11optic atrophy 3 family protein Negative GeneticPMID:22681890
gdh1NADP-specific glutamate dehydrogenase Gdh1 (predicted) Negative GeneticPMID:22681890
gpd3glyceraldehyde 3-phosphate dehydrogenase Gpd3 Negative GeneticPMID:22681890
rps190240S ribosomal protein S19 (predicted) Negative GeneticPMID:22681890
nup132nucleoporin Nup132 Negative GeneticPMID:22681890
SPCC1840.09NAD dependent epimerase/dehydratase family protein Negative GeneticPMID:22681890
mhf2FANCM-MHF complex subunit Mhf2 Negative GeneticPMID:22681890
cda1chitin deacetylase Cda1 Positive GeneticPMID:22681890
pof15F-box protein (predicted) Negative GeneticPMID:22681890
SPCC330.07cmembrane transporter (predicted) Positive GeneticPMID:22681890
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:22681890
Negative GeneticPMID:21504829
wtf16wtf element Wtf16 Negative GeneticPMID:22681890
rpl430260S ribosomal protein L37a (predicted) Negative GeneticPMID:22681890
alp31tubulin specific chaperone cofactor A, Alp31 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
gld1mitochondrial glycerol dehydrogenase Gld1 Negative GeneticPMID:22681890
ubp3ubiquitin C-terminal hydrolase Ubp3 Negative GeneticPMID:18818364
imp1importin alpha Negative GeneticPMID:22681890
bob1prefoldin subunit 5 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC977.17MIP water channel (predicted) Negative GeneticPMID:22681890
rpl170260S ribosomal protein L17 (predicted) Negative GeneticPMID:22681890
raf2Rik1-associated factor Raf2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
epe1Jmjc domain chromatin associated protein Epe1 Negative GeneticPMID:22681890
bio2biotin synthase Negative GeneticPMID:22681890
ppr8mitochondrial PPR repeat protein Ppr8 Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
mcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
fml1ATP-dependent 3' to 5' DNA helicase, FANCM ortholog Fml1 Negative GeneticPMID:18818364
pfd1prefoldin subunit 1 (predicted) Negative GeneticPMID:18818364
nhp6High-mobility group non-histone chromatin protein (predicted) Negative GeneticPMID:18818364
tfs1transcription elongation factor TFIIS Negative GeneticPMID:18818364
rdp1RNA-directed RNA polymerase Rdp1 Negative GeneticPMID:18818364
rsv2transcription factor Rsv2 Negative GeneticPMID:18818364
elp1elongator subunit Elp1 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
trm10tRNA m(1)G methyltransferase Trm10 (predicted) Positive GeneticPMID:22681890
SPBC31F10.12RNA-binding protein Tma20 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBC8E4.01cinorganic phosphate transporter (predicted) Negative GeneticPMID:22681890
mug147sequence orphan Negative GeneticPMID:22681890
bqt4bouquet formation protein Bqt4 Negative GeneticPMID:22681890
trs130TRAPP complex subunit Trs130 (predicted) Negative GeneticPMID:22681890
SPBC21B10.03cataxin-2 homolog (predicted) Negative GeneticPMID:22681890
SPCC338.14adenosine kinase (predicted) Negative GeneticPMID:22681890
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
SPAC1805.14sequence orphan Negative GeneticPMID:22681890
dph1UBA domain protein Dph1 Negative GeneticPMID:18818364
SPAC212.04cS. pombe specific DUF999 family protein 1 Negative GeneticPMID:22681890
bub3mitotic spindle checkpoint protein Bub3 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC869.05csulfate transporter (predicted) Negative GeneticPMID:22681890
SPCC576.01csulfonate dioxygenase (predicted) Negative GeneticPMID:22681890
SPBC32F12.12cGolgi membrane protein involved in vesicle-mediated transport (predicted) Positive GeneticPMID:22681890
moe1translation initiation factor eIF3d Moe1 Negative GeneticPMID:22681890
pyp1tyrosine phosphatase Pyp1 Positive GeneticPMID:22681890
arp6actin-like protein Arp6 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBCPT2R1.01cS. pombe specific DUF999 protein family 9 Negative GeneticPMID:22681890
dsk1SR protein-specific kinase Dsk1 Positive GeneticPMID:22681890
SPAC694.02DEAD/DEAH box helicase Negative GeneticPMID:22681890
rps170140S ribosomal protein S17 (predicted) Negative GeneticPMID:22681890
png2ING family homolog Png2 Positive GeneticPMID:22681890
SPCC16C4.106-phosphogluconolactonase (predicted) Negative GeneticPMID:22681890
SPCC594.01DUF1769 family protein Negative GeneticPMID:22681890
ftp105Ubp5 interacting protein Ftp105 Negative GeneticPMID:18818364
SPAC186.04cN-terminal of transmembrane channel, truncated Negative GeneticPMID:22681890
pcf2CAF assembly factor (CAF-1) complex subunit B, Pcf2 Negative GeneticPMID:22681890
SPBC106.12cTHO complex subunit (predicted) Negative GeneticPMID:22681890
cpd1tRNA (m1A) methyltransferase complex catalytic subunit Cpd1 Negative GeneticPMID:22681890
SPAC7D4.12cDUF1212 family protein Negative GeneticPMID:22681890
mpr1histidine-containing response regulator phosphotransferase Mpr1 Positive GeneticPMID:22681890
alg6glucosyltransferase Alg6 (predicted) Negative GeneticPMID:22681890
laf1clr6 L associated factor 1 Laf1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBC56F2.08cRNA-binding protein (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
pds5cohesin-associated protein Pds5 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
msh6MutS protein homolog Negative GeneticPMID:18818364
mmb1mitochondria microtubule binder Mmb1 Negative GeneticPMID:22681890
cut3condensin complex subunit Cut3 Negative GeneticPMID:22681890
clp1Cdc14-related protein phosphatase Clp1/Flp1 Negative GeneticPMID:22681890
SPCC1442.11csequence orphan Negative GeneticPMID:22681890
SPCC63.13DNAJ domain protein Negative GeneticPMID:22681890
SPCC162.11curidine kinase/uracil phosphoribosyltransferase (predicted) Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
est1telomerase regulator Est1 Negative GeneticPMID:18818364
mto1MT organizer Mto1 Negative GeneticPMID:22681890
fin1serine/threonine protein kinase, NIMA related Fin1 Negative GeneticPMID:18818364
mug113T5orf172 family protein Negative GeneticPMID:22681890
bgl2glucan beta-glucosidase Bgl2 (predicted) Negative GeneticPMID:22681890
mga2IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
spc34DASH complex subunit Spc34 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC186.09pyruvate decarboxylase (predicted) Negative GeneticPMID:22681890
ctp1CtIP-related endonuclease Negative GeneticPMID:22681890
SPBC15C4.06cubiquitin-protein ligase E3 (predicted) Negative GeneticPMID:18818364
SPCC16C4.20cHMG box protein (predicted) Negative GeneticPMID:22681890
SPBP35G2.14RNA-binding protein Negative GeneticPMID:22681890
dad1DASH complex subunit Dad1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBC25B2.10Usp (universal stress protein) family protein Negative GeneticPMID:22681890
rad55RecA family ATPase Rad55/Rhp55 Negative GeneticPMID:22681890
SPBC24C6.04delta-1-pyrroline-5-carboxylate dehydrogenase (predicted) Negative GeneticPMID:22681890
SPAC186.06ER unfolded protein response protein (predicted) Negative GeneticPMID:22681890
rpl230160S ribosomal protein L23 Negative GeneticPMID:22681890
swr1SNF2 family helicase Swr1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
sir2Sir2 family histone deacetylase Sir2 Negative GeneticPMID:22681890
php3CCAAT-binding factor complex subunit Php3 Negative GeneticPMID:22681890
rpp20160S acidic ribosomal protein P2A subunit (predicted) Negative GeneticPMID:22681890
uap2U2 snRNP-associated protein Uap2 Positive GeneticPMID:22681890
SPAC24B11.08cCOPII-coated vesicle component Erv46 (predicted) Negative GeneticPMID:18818364
lys4homocitrate synthase Negative GeneticPMID:22681890
caf16CCR4-Not complex subunit Caf16 (predicted) Positive GeneticPMID:18818364
grx3monothiol glutaredoxin Grx3 Negative GeneticPMID:22681890
ppr2mitochondrial PPR repeat protein Ppr2 Negative GeneticPMID:22681890
chp1chromodomain protein Chp1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
csn2COP9/signalosome complex subunit Csn2 Negative GeneticPMID:22681890
rxt2histone deacetylase complex subunit Rxt2 Positive GeneticPMID:22681890
nrm1negative regulator of MBF Negative GeneticPMID:22681890
myp2myosin II heavy chain Myo3 Negative GeneticPMID:22681890
SPCC24B10.19csequence orphan Negative GeneticPMID:22681890
hrq1RecQ type DNA helicase Hrq1 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
cys11cysteine synthase Negative GeneticPMID:22681890
wis2cyclophilin family peptidyl-prolyl cis-trans isomerase Wis2 Negative GeneticPMID:18818364
SPCC594.06cvacuolar SNARE Vam7 (predicted) Negative GeneticPMID:22681890
int6eIF3e subunit Int6 Negative GeneticPMID:22681890
vht1vitamin H transporter Vth1 Negative GeneticPMID:22681890
ubp4ubiquitin C-terminal hydrolase Ubp4 Negative GeneticPMID:18818364
ssp2serine/threonine protein kinase Ssp2 Positive GeneticPMID:22681890
SPAC323.03csequence orphan Positive GeneticPMID:18818364
mod21gamma tubulin complex subunit Mod21 Negative GeneticPMID:18818364
swc5Swr1 complex subunit Swc5 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
bst1GPI inositol deacylase Bst1 (predicted) Negative GeneticPMID:22681890
SPAPJ695.01cS. pombe specific UPF0321 family protein 3 Negative GeneticPMID:22681890
SPCC306.02cRab GTPase binding involved in ER to Golgi vesicle transport (predicted) Negative GeneticPMID:22681890
SPAC750.04cS. pombe specific 5Tm protein family Negative GeneticPMID:22681890
SPAC2H10.02c26S proteasome regulatory particle assembly protein (predicted) Negative GeneticPMID:22681890
swc2Swr1 complex complex subunit Swc2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
fft3fun thirty related protein Fft3 Positive GeneticPMID:22681890
mac1membrane anchored protein Mac1 Positive GeneticPMID:22681890
swd1Set1C complex subunit Swd1 Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
pac2cAMP-independent regulatory protein Pac2 Negative GeneticPMID:22681890
stm1G-protein coupled receptor Stm1 Positive GeneticPMID:22681890
pom34nucleoporin Pom34 Negative GeneticPMID:22681890
pex5peroxisomal targeting signal receptor Pex5 Positive GeneticPMID:22681890
clr1cryptic loci regulator Clr1 Negative GeneticPMID:22681890
SPBC25H2.15SSU-rRNA maturation protein Tsr4 homolog 1 (predicted) Negative GeneticPMID:22681890
tim13TIM22 inner membrane protein import complex subunit Tim13 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
mpc1mitochondrial pyruvate transmembrane transporter subunit Mpc1 Negative GeneticPMID:22681890
fcf2rRNA processing protein Fcf2 (predicted) Negative GeneticPMID:22681890
dsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
toc1Tor complex Tor2 interacting protein 1 Positive GeneticPMID:22681890
cdt2WD repeat protein Cdt2 Negative GeneticPMID:22681890
ebs1EST1 family nonsense-mediated mRNA decay (NMD) pathway protein Ebs1 (predicted) Negative GeneticPMID:22681890
gas5cell wall protein Gas5, 1,3-beta-glucanosyltransferase (predicted) Negative GeneticPMID:22681890
sec28coatomer epsilon subunit (predicted) Positive GeneticPMID:18818364
mms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ppk25serine/threonine protein kinase Ppk25 (predicted) Negative GeneticPMID:22681890
SPBC36.10mitochondrial intermembrane space protein sorting protein (predicted) Negative GeneticPMID:22681890
elp4elongator complex subunit Elp4 (predicted) Negative GeneticPMID:18818364
dot2ESCRT II complex subunit Dot2 Negative GeneticPMID:22681890
SPCC1795.10cSed5 Vesicle Protein Svp26 (predicted) Negative GeneticPMID:22681890
SPCC18.17c26S proteasome non-ATPase regulatory subunit (predicted) Negative GeneticPMID:22681890
eme1Holliday junction resolvase subunit Eme1 Negative GeneticPMID:18818364
dcr1dicer Negative GeneticPMID:18818364
SPBC16D10.08cheat shock protein Hsp104 (predicted) Negative GeneticPMID:22681890
SPCC1393.08transcription factor, zf-GATA type (predicted) Negative GeneticPMID:22681890
SPAC2F3.11exopolyphosphatase (predicted) Negative GeneticPMID:22681890
elp5elongator complex subunit Elp5 (predicted) Negative GeneticPMID:18818364
SPBC1734.07cTRAPP complex subunit Trs85 (predicted) Negative GeneticPMID:18818364
SPCC550.11karyopherin (predicted) Negative GeneticPMID:22681890
rds1conserved fungal protein Negative GeneticPMID:22681890
SPBC16A3.08cStm1 homolog (predicted) Negative GeneticPMID:22681890
cwf21complexed with Cdc5 protein Cwf21 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
snz1pyridoxine biosynthesis protein Negative GeneticPMID:22681890
SPAC1610.01conserved eukaryotic protein Positive GeneticPMID:22681890
SPAC637.06alpha-1,2-galactosyltransferase (predicted) Positive GeneticPMID:18818364
SPCC306.11sequence orphan Negative GeneticPMID:22681890
rtn1reticulon-like protein Rtn1 Negative GeneticPMID:22681890
sep1fork head transcription factor Sep1 Negative GeneticPMID:22681890
mug33conserved fungal protein Negative GeneticPMID:22681890
trm13tRNA 2'-O-methyltransferase Trm13 (predicted) Positive GeneticPMID:22681890
tip1CLIP170 family protein Tip1 Negative GeneticPMID:22681890
apl5AP-3 adaptor complex subunit Apl5 (predicted) Negative GeneticPMID:22681890
hhf2histone H4 h4.2 Negative GeneticPMID:22681890
rap1telomere binding protein Rap1 Negative GeneticPMID:18818364
hip1hira protein, histone chaperone Hip1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
pek1MAP kinase kinase Pek1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
mug154conserved fungal protein Negative GeneticPMID:22681890
clr3histone deacetylase (class II) Clr3 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ago1argonaute Negative GeneticPMID:18818364
elp6elongator complex subunit Elp6 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAPB1E7.04cchitinase (predicted) Negative GeneticPMID:22681890
SPAC869.04formamidase-like protein (predicted) Negative GeneticPMID:22681890
vrp1verprolin Negative GeneticPMID:18818364
SPBC215.07cPWWP domain protein (predicted) Negative GeneticPMID:22681890
ask1DASH complex subunit Ask1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
rhp14XP-A family homolog Rhp14 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ubc13ubiquitin conjugating enzyme Ubc13 Positive GeneticPMID:22681890
SPBC365.16conserved protein Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
dep1Sds3-like family protein Dep1 Positive GeneticPMID:22681890
spf1Set1C PHD Finger protein Spf1 Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
SPAC6C3.08proteasome regulatory particle, gankyrin (predicted) Negative GeneticPMID:22681890
pnk1DNA kinase/phosphatase Pnk1 Positive GeneticPMID:18818364
atg14autophagy specific phophatidylinositol 3-kinase complex subunit Atg14 (predicted) Positive GeneticPMID:22681890
SPCC1442.14cadenosine 5'-monophosphoramidase (predicted) Negative GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
def1RNAPII degradation factor Def1 (predicted) Negative GeneticPMID:22681890
SPBC29A3.09cAAA family ATPase Gcn20 (predicted) Negative GeneticPMID:22681890
ace2transcription factor Ace2 Negative GeneticPMID:22681890
glo1glyoxalase I Negative GeneticPMID:22681890
SPCC24B10.16cproteasome assembly chaperone 4 (predicted) Negative GeneticPMID:22681890
cbs2protein kinase activator (predicted) Positive GeneticPMID:18818364
sfp1transcription factor Sfp1 (predicted) Negative GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Phenotypic SuppressionPMID:19547744
swc3Swr1 complex subunit Swc3 Negative GeneticPMID:22681890
cwf15complexed with Cdc5 protein Cwf15 Positive GeneticPMID:22681890
swd2Set1C complex subunit Swd2.1 Positive GeneticPMID:18818364
spn4septin Spn4 Negative GeneticPMID:22681890
SPBC36B7.08cnucleosome assembly protein (predicted) Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
php5CCAAT-binding factor complex subunit Php5 Negative GeneticPMID:22681890
rpl340260S ribosomal protein L34 Negative GeneticPMID:22681890
mug81ATP-dependent RNA helicase Slh1 (predicted) Negative GeneticPMID:22681890
arb1argonaute binding protein 1 Negative GeneticPMID:22681890
erg28Erg28 protein (predicted) Negative GeneticPMID:22681890
SPAC12B10.01cubiquitin-protein ligase E3 (predicted) Negative GeneticPMID:18818364
dad3DASH complex subunit Dad3 Negative GeneticPMID:22681890
ctf18RFC-like complex subunit Ctf18 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
swd3WD repeat protein Swd3 Positive GeneticPMID:22681890
rsc1RSC complex subunit Rsc1 Negative GeneticPMID:18818364
asp1inositol hexakisphosphate kinase/inositol pyrophosphate synthase (predicted) Negative GeneticPMID:22681890
arv1Arv1-like family protein Arv1 (predicted) Negative GeneticPMID:22681890
SPBC651.04sequence orphan Negative GeneticPMID:22681890
spp27RNA polymerase I upstream activation factor complex subunit Spp27 Negative GeneticPMID:22681890
rpa12DNA-directed RNA polymerase complex I subunit Rpa12 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
abc3ABC transporter Abc3, unknown specificity Negative GeneticPMID:22681890
klp5kinesin-like protein Klp5 Negative GeneticPMID:22681890
SPAC17H9.08mitochondrial coenzyme A transporter (predicted) Negative GeneticPMID:22681890
SPAC9.02cpolyamine N-acetyltransferase (predicted) Negative GeneticPMID:22681890
tas3RITS complex subunit 3 Negative GeneticPMID:18818364
gyp1GTPase activating protein Gyp1 (predicted) Negative GeneticPMID:22681890
elp3elongator complex, histone acetyltransferase subunit Elp3 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
pam17TIM23 translocase complex-associated motor subunit Pam17 (predicted) Negative GeneticPMID:22681890
ef1a-atranslation elongation factor EF-1 alpha Ef1a-a Negative GeneticPMID:22681890
lsc1Lsk1 associated cyclin Positive GeneticPMID:22681890
hrp3ATP-dependent DNA helicase Hrp3 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
rpl410160S ribosomal protein L41 Negative GeneticPMID:22681890
mca1transcription factor, zf-fungal binuclear cluster type (predicted) Negative GeneticPMID:22681890
rpl160160S ribosomal protein L13/L16 (predicted) Negative GeneticPMID:22681890
SPAC212.06cDNA helicase in rearranged telomeric region, truncated Negative GeneticPMID:22681890
alf1ATP-dependent microtubule severing protein (predicted) Negative GeneticPMID:22681890
tom70mitochondrial TOM complex subunit Tom70 (predicted) Negative GeneticPMID:22681890
SPBC21B10.08csequence orphan Negative GeneticPMID:22681890
SPBC1348.01S. pombe specific DUF999 protein family 5 Negative GeneticPMID:22681890
rer1Rer1 family protein (predicted) Negative GeneticPMID:22681890
SPAC23A1.07ubiquitin-protein ligase E3 (predicted) Positive GeneticPMID:22681890
frp2ferric-chelate reductase Frp2 (predicted) Negative GeneticPMID:22681890
SPAC1071.09cDNAJ domain protein, DNAJC9 family (predicted) Negative GeneticPMID:22681890
spc2signal peptidase subunit Spc2 (predicted) Negative GeneticPMID:22681890
SPBPB2B2.17cS. pombe specific 5Tm protein family Negative GeneticPMID:22681890
SPCC4B3.03cmitochondrial morphology protein (predicted) Negative GeneticPMID:22681890
nse6Smc5-6 complex non-SMC subunit Nse6 Negative GeneticPMID:22681890
raf1Rik1-associated factor Raf1 Negative GeneticPMID:22681890
SPCC794.01cglucose-6-phosphate 1-dehydrogenase (predicted) Negative GeneticPMID:22681890
SPAC1486.03cRNA-binding splicing factor (predicted) Positive GeneticPMID:22681890
SPBC115.03gfo/idh/mocA family oxidoreductase (predicted) Negative GeneticPMID:22681890
mug80cyclin Clg1 (predicted) Negative GeneticPMID:22681890
hht2histone H3 h3.2 Negative GeneticPMID:18818364
spc19DASH complex subunit Spc19 Negative GeneticPMID:22681890
dph3diphthamide biosynthesis protein Dph3 (predicted) Negative GeneticPMID:22681890
SPAC17C9.14Pex19 protein (predicted) Positive GeneticPMID:22681890
ubx2UBX domain protein Ubx2 Negative GeneticPMID:22681890
pht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC6G9.01cconserved protein Negative GeneticPMID:22681890
SPCC1020.05phosphoprotein phosphatase (predicted) Negative GeneticPMID:22681890
rad51RecA family recombinase Rad51/Rhp51 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ddb1damaged DNA binding protein Ddb1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
cbp1CENP-B homolog Positive GeneticPMID:18818364
pho1acid phosphatase Pho1 Negative GeneticPMID:22681890
gsa1glutathione synthetase large subunit Gsa1 Positive GeneticPMID:22681890
mad1mitotic spindle checkpoint protein Mad1 Negative GeneticPMID:18818364
sds23PP2A-type phosphatase inhibitor Sds23/Moc1 Negative GeneticPMID:22681890
emc1ER membrane protein complex subunit Emc1 (predicted) Negative GeneticPMID:22681890
SPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBC336.13cmitochondrial inner membrane peptidase complex catalytic subunit 2 (predicted) Negative GeneticPMID:22681890
SPAC458.06WD repeat protein involved in autophagy Atg18c Positive GeneticPMID:18818364
swi6HP1 family chromodomain protein Swi6 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
exo1exonuclease I Exo1 Negative GeneticPMID:22681890
mal3EB1 family Mal3 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
csn1COP9/signalosome complex subunit Csn1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
alp14TOG ortholog Alp14 Negative GeneticPMID:18818364
duo1DASH complex subunit Duo1 Negative GeneticPMID:22681890
sce3translation initiation factor (predicted) Negative GeneticPMID:22681890
SPBC409.08spermine family transporter (predicted) Negative GeneticPMID:22681890
ppk21serine/threonine protein kinase Ppk21 Negative GeneticPMID:22681890
ssb3DNA replication factor A subunit Ssb3 Negative GeneticPMID:22681890
dad4DASH complex subunit Dad4 Negative GeneticPMID:22681890
sol1SWI/SNF complex subunit Sol1 Negative GeneticPMID:22681890
mug70conserved protein Mug20 Negative GeneticPMID:22681890
mid1medial ring protein Mid1 Negative GeneticPMID:22681890
dam1DASH complex subunit Dam1 Negative GeneticPMID:22681890
apl6AP-3 adaptor complex subunit Apl6 (predicted) Negative GeneticPMID:22681890
hob3BAR adaptor protein Hob3 Negative GeneticPMID:22681890
bqt3bouquet formation protein Bqt3 Negative GeneticPMID:22681890
set1histone lysine methyltransferase Set1 Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
SPCP20C8.02cS. pombe specific UPF0321 family protein 1 Negative GeneticPMID:22681890
rpl280160S ribosomal protein L27/L28 Negative GeneticPMID:22681890
SPBC16C6.05mitochondrial translation initiation factor (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBC1289.13calpha-1,2-galactosyltransferase (predicted) Negative GeneticPMID:22681890
alp16gamma tubulin complex subunit Alp16 Negative GeneticPMID:18818364
SPBPB2B2.11nucleotide-sugar 4,6-dehydratase (predicted) Negative GeneticPMID:22681890
pmk1MAP kinase Pmk1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ptr2PTR family peptide transporter Ptr2 Negative GeneticPMID:22681890
nem1Nem1-Spo7 phosphatase complex catalytic subunit Nem1 (predicted) Negative GeneticPMID:22681890
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ppk16serine/threonine protein kinase Ppk16 (predicted) Negative GeneticPMID:22681890
SPBC28E12.04sequence orphan Negative GeneticPMID:22681890
pkp1mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted) Positive GeneticPMID:22681890
rtt109RTT109 family histone lysine acetyltransferase Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
rpl270160S ribosomal protein L27 Negative GeneticPMID:22681890
spn1septin Spn1 Negative GeneticPMID:22681890
dcd1deoxycytidylate deaminase (predicted) Negative GeneticPMID:22681890
sst6ESCRT I complex subunit Vps23 Positive GeneticPMID:22681890
SPCC794.11cENTH/VHS domain protein Ent3 (predicted) Negative GeneticPMID:22681890
ubc16ubiquitin conjugating enzyme Ubc16 (predicted) Negative GeneticPMID:22681890
gal1galactokinase Gal1 Negative GeneticPMID:22681890
swi2Swi5 complex subunit Swi2 Positive GeneticPMID:18818364
clr2chromatin silencing protein Clr2 Negative GeneticPMID:22681890
SPAC22H10.09sequence orphan Negative GeneticPMID:22681890
rad57RecA family ATPase Rad57/Rhp57 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC328.01ckaryopherin (predicted) Negative GeneticPMID:18818364
SPBC839.03cneddylation protein Dcn1 (predicted) Negative GeneticPMID:18818364
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Negative GeneticPMID:22681890
SPAC9E9.09caldehyde dehydrogenase (predicted) Negative GeneticPMID:22681890
clr5Clr5 protein Negative GeneticPMID:22681890
mik1mitotic inhibitor kinase Mik1 Negative GeneticPMID:22681890
ies2Ino80 complex subunit Ies2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
swi3replication fork protection complex subunit Swi3 Negative GeneticPMID:18818364
air1zinc knuckle TRAMP complex subunit Air1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC24C9.12cglycine hydroxymethyltransferase (predicted) Negative GeneticPMID:22681890
apm3AP-3 adaptor complex subunit Apm3 (predicted) Negative GeneticPMID:22681890
SPBC1348.03S. pombe specific 5Tm protein family Negative GeneticPMID:22681890
alp13MRG family Clr6 histone deacetylase complex subunit Alp13 Phenotypic SuppressionPMID:19547744
Positive GeneticPMID:22681890
SPAC13F5.04cVps20 associated protein Vts1 (predicted) Negative GeneticPMID:22681890
msd1mitotic-spindle disanchored Msd1 Negative GeneticPMID:22681890
vps71Swr1 complex subunit Vps71 Negative GeneticPMID:18818364
ght6hexose transporter Ght6 Negative GeneticPMID:22681890
zip1transcription factor Zip1 Negative GeneticPMID:22681890
SPAC824.09cGTPase activating protein (predicted) Negative GeneticPMID:22681890
nup37WD repeat protein, nucleoporin Nup37 (predicted) Positive GeneticPMID:18818364
SPAC26H5.07cseven transmembrane receptor protein (predicted) Negative GeneticPMID:22681890
apc10anaphase-promoting complex subunit Apc10 Negative GeneticPMID:22681890
SPAC732.02cfructose-2,6-bisphosphate 2-phosphatase activity (predicted) Negative GeneticPMID:22681890
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
scs7sphingosine hydroxylase Scs7 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
klp6kinesin-like protein Klp6 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPBC29A10.16ccytochrome b5 (predicted) Negative GeneticPMID:22681890
SPBC1348.12transcription factor (predicted) Negative GeneticPMID:22681890
cam2myosin I light chain Cam2 Negative GeneticPMID:22681890
gms1UDP-galactose transporter Gms1 Negative GeneticPMID:22681890
snt2Lid2 complex subunit Snt2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
sum2G2/M transition checkpoint protein Sum2 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
ptp4phosphatidate cytidylyltransferase Ptp4 (predicted) Negative GeneticPMID:22681890
vps20ESCRT III complex subunit Vps20 Negative GeneticPMID:22681890
ulp2SUMO deconjugating cysteine peptidase Ulp2 (predicted) Negative GeneticPMID:22681890
nrc1bromodomain protein (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
sgf29SAGA complex subunit Sgf29 Negative GeneticPMID:18818364
rhp23Rad23 homolog Rhp23 Negative GeneticPMID:22681890
SPAC869.06cHHE domain cation binding protein (predicted) Negative GeneticPMID:22681890
shk2PAK-related kinase Shk2 Negative GeneticPMID:18818364
str3siderophore-iron transporter Str3 Negative GeneticPMID:22681890
lsk1P-TEFb-associated cyclin-dependent protein kinase Lsk1 Positive GeneticPMID:18818364
rpt419S proteasome regulatory subunit Rpt4 (predicted) Negative GeneticPMID:22681890
msc1multi-copy suppressor of Chk1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
arp8actin-like protein, Ino80 complex subunit Arp8 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
rik1silencing protein Rik1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
vps1dynamin family protein Vps1 Negative GeneticPMID:22681890
pab2poly(A) binding protein Pab2 Negative GeneticPMID:22681890
yaf9YEATS family histone acetyltransferase subunit Yaf9 Negative GeneticPMID:18818364
SPBC428.11homocysteine synthase Met17 Negative GeneticPMID:22681890
cay1cactin, spliceosome complex subunit (predicted) Negative GeneticPMID:18818364
ssa1heat shock protein Ssa1 (predicted) Negative GeneticPMID:22681890
SPAC19A8.11crecombination protein Irc6 (predicted) Negative GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
hrp1ATP-dependent DNA helicase Hrp1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
Contact Curators
External References
Database Identifier Description
NBRP SPAC16C9.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC16C9.05 Retrieval of eukaryotic orthologs
BioGrid SPAC16C9.05 BioGRID Interaction Datasets
Bähler Lab SPAC16C9.05 Cell Cycle Expression Profile
Bähler Lab SPAC16C9.05 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC16C9.05 Pheromone response/mating expression profiles
Bähler Lab SPAC16C9.05 Environmental stress expression profiles
Bähler Lab SPAC16C9.05 Bähler Lab Transcriptome Viewer
Cyclebase SPAC16C9.05 Cell Cycle Data
PInt SPAC16C9.05 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC16C9.05 Entrez Gene
SPD / RIKEN19/19C10Orfeome Localization Data
WikiGene2542318Clr6 histone deacetylase associated PHD protein-1 Cph1
EntrezGene2542318Clr6 histone deacetylase associated PHD protein-1 Cph1
UniProtKB/SwissProtQ09819Uncharacterized protein C16C9.05
ModBaseQ09819Database of comparative protein structure models
Pfam Protein DomainsQ09819Pfam Domain Arrangement
RefSeq PeptideNP_593079Clr6 histone deacetylase associated PHD protein-1 Cph1
RefSeq mRNANM_001018476972h- Clr6 histone deacetylase associated PHD protein-1 Cph1 (cph1), mRNA
European Nucleotide ArchiveCAA91193ENA Protein Mapping
SPD / RIKEN19/19C10Orfeome Localization Data

Literature for cph1
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013