SPAC16E8.10c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC16E8.10c Gene Start3519812
Synonyms Gene End3518714
Productmitochondrial ribosomal protein subunit S7 (predicted) Gene Length1099
Feature Typeprotein coding CDS Start3519760
Name Description CDS End3518894
Characterisation Statusbiological_role_inferred CDS Length867

Ensembl Gene Location
  1. vph1
  2. SPAC16E8.08
  3. scd1
  4. SPAC16E8.10c
  5. tfb1
  6. SPAC16E8.18
  7. SPAC16E8.12c
  8. SPAC16E8.13
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC16E8.10cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAIPR020606GO_REF:0000002
GO:0003735structural constituent of ribosomeISSUniProtKB:P47150GO_REF:0000001
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006412translationISSUniProtKB:P47150GO_REF:0000001
GO:0032543mitochondrial translationNASGO_REF:0000051
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionIDAPMID:16823372
GO:0005763mitochondrial small ribosomal subunitISSUniProtKB:P47150GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
135198123519227
235191393518714

References

Region Start End Reference
three_prime_UTR35188933518714PMID:21511999
three_prime_UTR35188933518714PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00177 IPR023798 Pfam Ribosomal protein S5/S7 124 252 3
PS00052 IPR020606 Prosite Patterns Ribosomal protein S5/S7 123 149 3
G3DSA:1.10.455.10 IPR023798 Gene3D 122 258 3
SSF47973 IPR023798 SuperFamily 117 252 3
Coil ncoils Rabaptin coiled-coil domain 60 81 974
PTHR11205 IPR000235 hmmpanther Ribosomal protein S5/S7 91 259 3
PTHR11205:SF14 hmmpanther 91 259 1

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517

Protein Properties

Ave. residue weight 114.13 Da
Charge 11.50
Isoelectric point 10.05
Molecular weight 29.56 kDa
Number of residues 259
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide865.64PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.6PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.48PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC16E8.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC16E8.10c Retrieval of eukaryotic orthologs
BioGrid SPAC16E8.10c BioGRID Interaction Datasets
Bähler Lab SPAC16E8.10c Cell Cycle Expression Profile
Bähler Lab SPAC16E8.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC16E8.10c Pheromone response/mating expression profiles
Bähler Lab SPAC16E8.10c Environmental stress expression profiles
Bähler Lab SPAC16E8.10c Bähler Lab Transcriptome Viewer
Cyclebase SPAC16E8.10c Cell Cycle Data
PInt SPAC16E8.10c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC16E8.10c Entrez Gene
WikiGene2542330mitochondrial ribosomal protein subunit S7
EntrezGene2542330mitochondrial ribosomal protein subunit S7
SPD / RIKEN10/10D08Orfeome Localization Data
UniProtKB/SwissProtO1374437S ribosomal protein S7, mitochondrial
ModBaseO13744Database of comparative protein structure models
Pfam Protein DomainsO13744Pfam Domain Arrangement
RefSeq PeptideNP_594222mitochondrial ribosomal protein subunit S7
RefSeq mRNANM_001019645972h- mitochondrial ribosomal protein subunit S7 (SPAC16E8.10c), mRNA
European Nucleotide ArchiveCAB11038ENA Protein Mapping
UniParcUPI000041A1C5UniProt Archive

Literature for SPAC16E8.10c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013