ecm33 (SPAC1705.03c)

Gene Standard Nameecm33 ChromosomeI
Systematic IDSPAC1705.03c Gene Start1571567
SynonymsSPAC1F2.01, SPAC23H4.19 Gene End1569613
Productcell wall protein Ecm33 Gene Length1955
Feature Typeprotein coding CDS Start1571260
Name Description CDS End1569995
Characterisation Statuspublished CDS Length1266

Ensembl Gene Location
  1. SPRRNA.53
  2. Tf2-2
  3. SPAC1705.02
  4. ecm33
  5. SPNCRNA.80
  6. SPNCRNA.745
  7. SPNCRNA.175
  8. SPNCRNA.81
  9. rbx1
  10. srb10
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyecm33delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0031505fungal-type cell wall organizationISOSGD:S000000282GO_REF:0000024
GO:0035556intracellular signal transductionIGIpmk1GO_REF:0000001
GO:0055074calcium ion homeostasisIMPPMID:20032302
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005576extracellular regionIEAUniProtKB:KW-0964GO_REF:0000037
GO:0005829cytosolIDAPMID:16823372
GO:0009277fungal-type cell wallIDAPMID:17230583
GO:0009897external side of plasma membraneISOSGD:S000000282GO_REF:0000024
GO:0009986cell surfaceIDAPMID:20032302
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
GO:0031225anchored to membraneIEAUniProtKB:KW-0336GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
115715671569613
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
G3DSA:3.80.20.20 Gene3D 28 122 2
SSF52058 SuperFamily 23 124 11
SSF52058 SuperFamily 217 300 11
PTHR31018 hmmpanther 10 421 2
SignalP-noTM signalp 1 19 212

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00818glycosylphosphatidylinositolated residueevidenceInferred from Direct AssayPMID:17230583

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide

Protein Properties

Ave. residue weight 102.96 Da
Charge -24.50
Isoelectric point 3.69
Molecular weight 43.35 kDa
Number of residues 421
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
promoter contains CRE element PMID:20032302
promoter contains RLM1 element PMID:20032302
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide32676.8PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1242.68PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide5.7PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide48PMID:23101633
Pathway
DescriptionQualifierReference
Mkh1-Pek1-Spm1 MAP kinase PMID:20032302
Species Distribution
DescriptionQualifierReference
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
pmk1MAP kinase Pmk1 Synthetic RescuePMID:20032302
Phenotypic Suppression
cis4cation diffusion family zinc membrane transporter Cis4 Dosage RescuePMID:22848669
ppb1calcium-dependent serine/threonine protein phosphatase calcineurin A, catalytic subunit Ppb1 Dosage RescuePMID:20032302
apm1AP-1 adaptor complex mu subunit Apm1 Dosage RescuePMID:22848669
SPBC1E8.05conserved fungal protein Dosage RescuePMID:22848669
aah3alpha-amylase homolog Aah3 Dosage RescuePMID:22848669
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
skp1SCF ubiquitin ligase complex subunit Skp1 Two-hybridPMID:17016471
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:22119525
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External References
Database Identifier Description
NBRP SPAC1705.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1705.03c Retrieval of eukaryotic orthologs
BioGrid SPAC1705.03c BioGRID Interaction Datasets
Bähler Lab SPAC1705.03c Cell Cycle Expression Profile
Bähler Lab SPAC1705.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1705.03c Pheromone response/mating expression profiles
Bähler Lab SPAC1705.03c Environmental stress expression profiles
Bähler Lab SPAC1705.03c Bähler Lab Transcriptome Viewer
Cyclebase SPAC1705.03c Cell Cycle Data
PInt SPAC1705.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1705.03c Entrez Gene
WikiGene3361538cell wall protein Ecm33
Uniprot_genenameECM33
EntrezGene3361538cell wall protein Ecm33
SPD / RIKEN20/20C02Orfeome Localization Data
UniProtKB/SwissProtO13960Cell wall protein ecm33
ModBaseO13960Database of comparative protein structure models
Pfam Protein DomainsO13960Pfam Domain Arrangement
RefSeq_mRNA_predictedXM_001713003972h- cell wall protein Ecm33 (ecm33), mRNA
RefSeq_peptide_predictedXP_001713055cell wall protein Ecm33
European Nucleotide ArchiveCAB11655ENA Protein Mapping
European Nucleotide ArchiveCAB86946ENA Protein Mapping
UniParcUPI000006C8D2UniProt Archive

Literature for ecm33
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013