ecm33 (SPAC1705.03c)


Gene Standard Nameecm33 Characterisation Statuspublished
Systematic IDSPAC1705.03c Feature Typeprotein coding
SynonymsSPAC1F2.01, SPAC23H4.19 Name Description
Productcell wall protein Ecm33 Product Size421aa, 43.35 kDa
Genomic Location Chromosome I, 1571567-1569613 (1955nt); CDS:1571260-1569995 (1266nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0055074calcium ion homeostasisIMPPMID:2003230217
GO:0031505fungal-type cell wall organizationISOSGD:S000000282GO_REF:000002456
GO:0035556intracellular signal transductionIGIpmk1PMID:20032302248
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0031225anchored component of membraneIEAUniProtKB-KW:KW-0336GO_REF:000003733
GO:0009986cell surfaceIDAPMID:2003230294
GO:0005829cytosolIDAPMID:168233722315
GO:0009897external side of plasma membraneISOSGD:S000000282GO_REF:000002447
GO:0009277fungal-type cell wallIDAPMID:1723058336
GO:0016021integral component of membraneIEAUniProtKB-KW:KW-0812GO_REF:00000371018
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyecm33ΔNullPMID:204732893759
Microscopyecm33ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyecm33ΔNullPECO:0000005, PECO:0000137PMID:23697806
Target Of
OntologyRelationshipGeneProductReference
GO regulated by atf1 transcription factor, Atf-CREB family Atf1 PMID:20032302
GO regulated by mbx1 MADS-box transcription factor Mbx1 PMID:20032302
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
115715671569613
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PTHR31018:SF0 HMMPANTHER 6 390 2
PTHR31018 HMMPANTHER 6 390 2
3.80.20.20 Gene3D IPR000494 EGF receptor, L domain 23 43 2
3.80.20.20 Gene3D IPR000494 EGF receptor, L domain 44 116 2
3.80.20.20 Gene3D IPR000494 EGF receptor, L domain 117 189 2
SSF52058 SuperFamily 217 300 11
SSF52058 SuperFamily 23 124 11
SignalP-noTM signalp 1 19 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReferenceCount
SO:0000418signal_peptide279

Protein Properties

Ave. residue weight 102.96 Da
Charge -24.50
Isoelectric point 3.69
Molecular weight 43.35 kDa
Number of residues 421
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00818glycosylphosphatidylinositolated residueIDAPMID:1723058331
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1242.68during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
97610during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
32676.8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
48during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
5.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Misc
DescriptionQualifierReferenceCount
promoter contains CRE element PMID:200323022
promoter contains RLM1 element PMID:200323021
Pathway
DescriptionQualifierReferenceCount
Mkh1-Pek1-Spm1 MAP kinase PMID:200323023
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi only623
conserved in fungi4600
conserved in eukaryotes4514
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
apm1AP-1 adaptor complex mu subunit Apm1 Dosage RescuePMID:22848669
aah3alpha-amylase homolog Aah3 Dosage RescuePMID:22848669
ppb1calcium-dependent serine/threonine protein phosphatase calcineurin A, catalytic subunit Ppb1 Dosage RescuePMID:20032302
pmk1MAP kinase Pmk1 Synthetic RescuePMID:20032302
Phenotypic Suppression
SPBC1E8.05conserved fungal protein Dosage RescuePMID:22848669
cis4cation diffusion family zinc membrane transporter Cis4 Dosage RescuePMID:22848669
ubc4ubiquitin conjugating enzyme Ubc4 Dosage RescuePMID:24454826
ubi1ribosomal-ubiquitin fusion protein Ubi1 (predicted) Dosage RescuePMID:24454826
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
skp1SCF ubiquitin ligase complex subunit Skp1 Two-hybridPMID:17016471
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:22119525
External References
Database Identifier Description
NBRP SPAC1705.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1705.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1705.03c BioGRID Interaction Datasets
Expression Viewer SPAC1705.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1705.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1705.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1705.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1705.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1705.03c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1705.03c Cell Cycle Data
GEO SPAC1705.03c GEO profiles
PInt SPAC1705.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1705.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1705.03c Fission yeast phenotypic data & analysis
SPD / RIKEN20/20C02Orfeome Localization Data
UniProtKB/SwissProtO13960Cell wall protein ecm33
ModBaseO13960Database of comparative protein structure models
STRINGO13960Network display of known and predicted interactions and functional associations
RefSeq mRNAXM_001713003972h- cell wall protein Ecm33 (ecm33), mRNA
RefSeq PeptideXP_001713055cell wall protein Ecm33
European Nucleotide ArchiveCAB11655.3ENA Protein Mapping
European Nucleotide ArchiveCAB86946.1ENA Protein Mapping
UniParcUPI000006C8D2UniProt Archive

Literature for ecm33

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014