SPAC17A2.02c

Synonyms ChromosomeI
ProductDUF887 family protein Gene Start3554138
Feature Typeprotein coding Gene End3552290
Name Description CDS Start3553739
Characterisation Statusconserved_unknown CDS End3552867

Ensembl Gene Location
SPAC1B1.04c SPRRNA.15 bsu1 > SPAC17A2.02c < SPNCRNA.916 vma6 cns1 SPNCRNA.124 SPATRNATRP.01 osm1
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
135541383552290

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF03798 Pfam TRAM/LAG1/CLN8 homology domain 78 263 125.2 3
SM00724 Smart TRAM/LAG1/CLN8 homology domain 74 271 166.1 3
TMHMM tmhmm Double transmembrane domain 41 60 0.97183 1312
TMHMM tmhmm Double transmembrane domain 81 100 0.98207 1312
TMHMM tmhmm Double transmembrane domain 110 130 0.94281 1312
TMHMM tmhmm Double transmembrane domain 139 160 0.99193 1312
TMHMM tmhmm Double transmembrane domain 169 188 0.85871 1312
TMHMM tmhmm Double transmembrane domain 202 221 0.99852 1312
TMHMM tmhmm Double transmembrane domain 239 259 0.991 1312
PS50922 PROSITE TRAM/LAG1/CLN8 homology domain 74 271 44.219 3

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073

Protein Properties

Ave. residue weight 113.94 Da
Charge 16.00
Isoelectric point 9.65
Molecular weight 33.04 kDa
Number of residues 290
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005783endoplasmic reticulumISS SGD:S000006318GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005783
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPAC17A2.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC17A2.02c Retrieval of eukaryotic orthologs
BioGrid SPAC17A2.02c BioGRID Interaction Datasets
Bähler Lab SPAC17A2.02c Cell Cycle Expression Profile
Bähler Lab SPAC17A2.02c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC17A2.02c Pheromone response/mating expression profiles
Bähler Lab SPAC17A2.02c Environmental stress expression profiles
Bähler Lab SPAC17A2.02c Bähler Lab Transcriptome Viewer
Cyclebase SPAC17A2.02c Cell Cycle Data
Entrez Gene SPAC17A2.02c Link to Entrez Gene
SPD / RIKEN11/11G10Orfeome Localization Data
UniProtKB/SwissProtO13752Uncharacterized TLC domain-containing protein C17A2.02c
ArrayExpressO13752Link to ArrayExpress
RefSeq PeptideNP_594236DUF887 family protein
RefSeq mRNANM_001019659972h- DUF887 family protein (SPAC17A2.02c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB16558ENA Protein Mapping
UniParcUPI000006BFBEUniProt Archive

Literature for SPAC17A2.02c

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Search: UK PMC or PubMed