SPAC17G8.08c

Synonyms ChromosomeI
Producthuman TMEM165 homolog Gene Start2356601
Feature Typeprotein coding Gene End2355278
Name Description CDS Start2356482
Characterisation Statusconserved_unknown CDS End2355348

Ensembl Gene Location
new1 arc5 med20 SPAC17G8.06c yaf9 > SPAC17G8.08c < shg1 dma1 imt3 SPNCRNA.817 SPNCRNA.77 prl59 SPNCRNA.78 SPAC17G8.12
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
123566012356426
223561542355278

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF01169 Pfam Uncharacterised protein family UPF0016 53 125 70 2
PF01169 Pfam Uncharacterised protein family UPF0016 203 278 77.9 2
TMHMM tmhmm Double transmembrane domain 54 70 0.52936 1312
TMHMM tmhmm Double transmembrane domain 82 104 0.95301 1312
TMHMM tmhmm Double transmembrane domain 112 129 0.73086 1312
TMHMM tmhmm Double transmembrane domain 194 213 0.98203 1312
TMHMM tmhmm Double transmembrane domain 232 252 0.98949 1312
TMHMM tmhmm Double transmembrane domain 266 285 0.99977 1312
PS01214 scanprosite Uncharacterised protein family UPF0016 61 70 1
SIGNALP_EUK Signalp 1 19 0 456

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000065protein N-terminal signal sequenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000065
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073

Protein Properties

Ave. residue weight 109.07 Da
Charge 8.00
Isoelectric point 9.09
Molecular weight 31.30 kDa
Number of residues 287
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005783endoplasmic reticulumIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005783
GO:0005794Golgi apparatusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005794

Species Distribution

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DescriptionSourceAll Genes
conserved in BacteriaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000086
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
stc1LIM-like protein linking chromatin modification to RNAi, Stc1 Affinity Capture-MS

External References

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Database Identifier Description
NBRP SPAC17G8.08c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC17G8.08c Retrieval of eukaryotic orthologs
BioGrid SPAC17G8.08c BioGRID Interaction Datasets
Bähler Lab SPAC17G8.08c Cell Cycle Expression Profile
Bähler Lab SPAC17G8.08c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC17G8.08c Pheromone response/mating expression profiles
Bähler Lab SPAC17G8.08c Environmental stress expression profiles
Bähler Lab SPAC17G8.08c Bähler Lab Transcriptome Viewer
Cyclebase SPAC17G8.08c Cell Cycle Data
Entrez Gene SPAC17G8.08c Link to Entrez Gene
SPD / RIKEN17/17H03Orfeome Localization Data
UniProtKB/SwissProtQ10320GDT1-like protein C17G8.08c
ArrayExpressQ10320Link to ArrayExpress
RefSeq PeptideNP_593731GDT1-like protein
RefSeq mRNANM_001019162972h- GDT1-like protein (SPAC17G8.08c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAA93691ENA Protein Mapping
UniParcUPI000013A891UniProt Archive

Literature for SPAC17G8.08c

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Search: UK PMC or PubMed