hem2 (SPAC1805.06c)


Gene Standard Namehem2 Characterisation Statusbiological role inferred
Systematic IDSPAC1805.06c Feature Typeprotein coding
Synonyms Name Description
Productporphobilinogen synthase Hem2 (predicted) Product Size329aa, 36.12 kDa
Genomic Location Chromosome I, 2785086-2783547 (1540nt); CDS:2784930-2783941 (990nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
lead ion binding1
Annotation ExtensionEvidenceWith/FromReference
porphobilinogen synthase activity1
Annotation ExtensionEvidenceWith/FromReference
zinc ion binding237
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
GO Cellular Component
Term NameCount
cytoplasm4213
Annotation ExtensionEvidenceWith/FromReference
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
nucleus2700
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
sensitive to hydroxyureahem2Δ594
viable vegetative cell populationhem2Δ3850

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyhem2Δ3102
Target Of
OntologyRelationshipGeneProduct
GO substrate of ubp5 ubiquitin C-terminal hydrolase Ubp5
GO substrate of ubp9 ubiquitin C-terminal hydrolase Ubp9
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2785086..2783547
mRNA2785086..2783547
5' UTR2785086..2784931AU010359
CDS2784930..2783941
3' UTR2783940..2783547PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00490 Pfam IPR001731 Delta-aminolevulinic acid dehydratase 11 326 1
SM01004 SMART IPR001731 Delta-aminolevulinic acid dehydratase 4 327 1
PS00169 Prosite Patterns IPR030656 Delta-aminolevulinic acid dehydratase, active site 245 257 1
PTHR11458 HMMPANTHER IPR001731 Delta-aminolevulinic acid dehydratase 1 328 1
PTHR11458:SF2 HMMPANTHER 1 328 1
3.20.20.70 Gene3D IPR013785 Aldolase-type TIM barrel 5 328 35
SSF51569 SuperFamily 9 328 9
PIRSF001415 PIRSF IPR001731 Delta-aminolevulinic acid dehydratase 1 329 1
PR00144 PRINTS IPR001731 Delta-aminolevulinic acid dehydratase 301 320 1
PR00144 PRINTS IPR001731 Delta-aminolevulinic acid dehydratase 154 173 1
PR00144 PRINTS IPR001731 Delta-aminolevulinic acid dehydratase 245 261 1
PR00144 PRINTS IPR001731 Delta-aminolevulinic acid dehydratase 123 137 1
PR00144 PRINTS IPR001731 Delta-aminolevulinic acid dehydratase 193 212 1
PR00144 PRINTS IPR001731 Delta-aminolevulinic acid dehydratase 271 286 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.79 Da
Charge -1.50
Codon Adaptation Index 0.52
Isoelectric point 6.17
Molecular weight 36.12 kDa
Number of residues 329
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for hem2 (SPAC1805.06c)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
53296during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
49105during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
43319during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
53417during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
12654.8during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
48175during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
3561.12during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3.2during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.45during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Disease Association
DescriptionQualifierReferenceCount
porphyria6
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3093
conserved in fungi4607
conserved in eukaryotes4517
conserved in bacteria1005
conserved in metazoa3427
conserved in vertebrates3402
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPAC1805.06c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
positive genetic interaction withSPAC4C5.01pseudouridine-5'-phosphatase (predicted) Positive GeneticPMID:22681890
positive genetic interaction withngg1SAGA complex subunit Ngg1/Ada3 Positive GeneticPMID:22681890
positive genetic interaction withmkh1MEK kinase (MEKK) Mkh1 Positive GeneticPMID:22681890
positive genetic interaction withmed7mediator complex subunit Med7 Positive GeneticPMID:22681890
positive genetic interaction withtrm82tRNA (guanine-N7-)-methyltransferase subunit Trm82 (predicted) Positive GeneticPMID:22681890
positive genetic interaction withssp2AMP-activated protein serine/threonine kinase alpha subunit Ssp2 Positive GeneticPMID:22681890
positive genetic interaction withypa1protein phosphatase type 2A regulator, PTPA family Ypa1 Positive GeneticPMID:22681890
positive genetic interaction withxap5xap-5-like protein Positive GeneticPMID:24957674
External References
Database Identifier Description
NBRP SPAC1805.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1805.06c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1805.06c BioGRID Interaction Datasets
Expression Viewer SPAC1805.06c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1805.06c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1805.06c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1805.06c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1805.06c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1805.06c Transcriptome Viewer (Bähler Lab)
GEO SPAC1805.06c GEO profiles
PInt SPAC1805.06c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1805.06c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1805.06c Fission yeast phenotypic data & analysis
Cyclebase SPAC1805.06c.1 Cell Cycle Data
IntEnz4.2.1.24Integrated relational Enzyme database
Rhea4.2.1.24Annotated reactions database
SPD / RIKEN14/14D03Orfeome Localization Data
UniProtKB/SwissProtP78974Delta-aminolevulinic acid dehydratase
ModBaseP78974Database of comparative protein structure models
STRINGP78974Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593917porphobilinogen synthase Hem2 (predicted)
RefSeq mRNANM_001019346972h- porphobilinogen synthase Hem2 (predicted) (hem2), mRNA
European Nucleotide ArchiveU83568ENA EMBL mapping
European Nucleotide ArchiveCAB55847.1ENA Protein Mapping
MetaCycPWY-5188Tetrapyrrole biosynthesis I (from glutamate)
MetaCycPWY-5189Tetrapyrrole biosynthesis II (from glycine)
KEGG00860+4.2.1.24Porphyrin and chlorophyll metabolism
UniParcUPI000012C45AUniProt Archive

Literature for hem2

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016