rps7 (SPAC18G6.14c)


Gene Standard Namerps7 Characterisation Statusbiological_role_inferred
Systematic IDSPAC18G6.14c Feature Typeprotein coding
Synonyms Name Description
Product40S ribosomal protein S7 (predicted) Product Size195aa, 21.95 kDa
Genomic Location Chromosome I, 2242554-2241748 (807nt); CDS:2242523-2241936 (588nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis337
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
nucleolus343
Annotation ExtensionEvidenceWith/FromReference
nucleus2740
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrps7ΔNullPECO:0000005, PECO:0000137PMID:236978061338
Microscopyrps7ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002151inviable spore465
penetrance FYPO_EXT:0000001Microscopyrps7ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
122425542241748

UTRs

Region Coordinates Reference
five_prime_UTR2242554..2242524PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01251 Pfam IPR000554 Ribosomal protein S7e 5 190 1
PS00948 Prosite Patterns IPR000554 Ribosomal protein S7e 78 91 1
PTHR11278:SF0 HMMPANTHER 1 192 1
PTHR11278 HMMPANTHER IPR000554 Ribosomal protein S7e 1 192 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.55 Da
Charge 18.00
Isoelectric point 10.85
Molecular weight 21.95 kDa
Number of residues 195
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineIDAS170PMID:182575171670
present during cellular response to thiabendazole
MOD:00047O-phospho-L-threonineIDAT151PMID:18257517692
present during cellular response to thiabendazole
present during cellular response to thiabendazoleIDAT146PMID:18257517
MOD:00696phosphorylated residueNASPMID:182575171922
NASPMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
378779during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
402338during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
408456during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
428490during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
149704.21during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
362010during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
68126.76during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
130during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
11during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
cwf10U5 snRNP GTPase subunit Cwf10 Affinity Capture-MSPMID:24442611
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
cka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:23462181
lea1U2 snRNP-associated protein Lea1 (predicted) Affinity Capture-MSPMID:24442611
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPAC18G6.14c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC18G6.14c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC18G6.14c BioGRID Interaction Datasets
Expression Viewer SPAC18G6.14c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC18G6.14c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC18G6.14c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC18G6.14c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC18G6.14c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC18G6.14c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC18G6.14c Cell Cycle Data
GEO SPAC18G6.14c GEO profiles
PInt SPAC18G6.14c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC18G6.14c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC18G6.14c Fission yeast phenotypic data & analysis
SPD / RIKEN06/06D07Orfeome Localization Data
UniProtKB/SwissProtQ1010140S ribosomal protein S7
ModBaseQ10101Database of comparative protein structure models
STRINGQ10101Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59367740S ribosomal protein S7
RefSeq mRNANM_001019109972h- 40S ribosomal protein S7 (rps7), mRNA
European Nucleotide ArchiveCAA92393.1ENA Protein Mapping
UniParcUPI000013511DUniProt Archive

Literature for rps7

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014