rps7 (SPAC18G6.14c)


Gene Standard Namerps7 Characterisation Statusbiological role inferred
Systematic IDSPAC18G6.14c Feature Typeprotein coding
Synonyms Name Description
Product40S ribosomal protein S7 (predicted) Product Size195aa, 21.95 kDa
Genomic Location Chromosome I, 2242554-2241748 (807nt); CDS:2242523-2241936 (588nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation470
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
nucleolus365
Annotation ExtensionEvidenceWith/FromReference
nucleus2691
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationrps7Δ1452

Cell Phenotype

Term NameGenotypesCount
inviable sporerps7Δ476
Target Of
OntologyRelationshipGeneProduct
GO substrate of ubp15 ubiquitin C-terminal hydrolase Ubp15
GO substrate of ubp4 ubiquitin C-terminal hydrolase Ubp4
GO substrate of ubp5 ubiquitin C-terminal hydrolase Ubp5
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2242554..2241748
mRNA2242554..2241748
5' UTR2242554..2242524PMID:21511999
CDS2242523..2241936
3' UTR2241935..2241748AU011818
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01251 Pfam IPR000554 Ribosomal protein S7e 6 188 1
PS00948 Prosite Patterns IPR000554 Ribosomal protein S7e 78 91 1
PTHR11278 HMMPANTHER IPR000554 Ribosomal protein S7e 1 195 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.55 Da
Charge 18.00
Codon Adaptation Index 0.72
Isoelectric point 10.85
Molecular weight 21.95 kDa
Number of residues 195
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1677
present during cellular response to thiabendazoleS170
Annotation ExtensionEvidenceResidueReference
present during cellular response to thiabendazole IDA S170 PMID:18257517
O-phospho-L-threonine 701
present during cellular response to thiabendazoleT151
present during cellular response to thiabendazoleT146
Annotation ExtensionEvidenceResidueReference
present during cellular response to thiabendazole IDA T151 PMID:18257517
present during cellular response to thiabendazole IDA T146 PMID:18257517
phosphorylated residue 1932
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
ubiquitinylated lysineK6, K9, K70, K85, K86, K177 512
Annotation ExtensionEvidenceResidueReference
IDA PMID:26412298
mass spectrometry evidence K86 PMID:26412298
mass spectrometry evidence K70 PMID:26412298
mass spectrometry evidence K177 PMID:26412298
mass spectrometry evidence K85 PMID:26412298
mass spectrometry evidence K6 PMID:26412298
mass spectrometry evidence K9 PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps7 (SPAC18G6.14c)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
378779during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
402338during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
408456during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
428490during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
149704.21during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
362010during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
68126.76during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
130during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
11during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2505
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPAC18G6.14c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
affinity captured bycka1serine/threonine protein kinase Cka1 Affinity Capture-MSPMID:23462181
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bydsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
affinity captured bylea1U2 snRNP-associated protein Lea1 (predicted) Affinity Capture-MSPMID:24442611
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured byair1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
affinity captured bycwf10U5 snRNP GTPase subunit Cwf10 Affinity Capture-MSPMID:24442611
binds activation domain construct withnap2nucleosome assembly protein Nap2 Two-hybridPMID:26771498
External References
Database Identifier Description
NBRP SPAC18G6.14c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC18G6.14c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC18G6.14c BioGRID Interaction Datasets
Expression Viewer SPAC18G6.14c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC18G6.14c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC18G6.14c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC18G6.14c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC18G6.14c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC18G6.14c Transcriptome Viewer (Bähler Lab)
GEO SPAC18G6.14c GEO profiles
PInt SPAC18G6.14c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC18G6.14c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC18G6.14c Fission yeast phenotypic data & analysis
Cyclebase SPAC18G6.14c.1 Cell Cycle Data
SPD / RIKEN06/06D07Orfeome Localization Data
UniProtKB/SwissProtQ1010140S ribosomal protein S7
ModBaseQ10101Database of comparative protein structure models
STRINGQ10101Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59367740S ribosomal protein S7
RefSeq mRNANM_001019109972h- 40S ribosomal protein S7 (rps7), mRNA
European Nucleotide ArchiveCAA92393.1ENA Protein Mapping
UniParcUPI000013511DUniProt Archive

Literature for rps7

Search: Europe PMC or PubMed

Release Version: PomBase:30_60 - 12 May 2016