rps3001 (SPAC19B12.04)


Gene Standard Namerps3001 Characterisation Statusbiological_role_inferred
Systematic IDSPAC19B12.04 Feature Typeprotein coding
Synonymsrps30-1 Name Description
Product40S ribosomal protein S30 (predicted) Product Size61aa, 6.91 kDa
Genomic Location Chromosome I, 4890186-4890829 (644nt); CDS:4890335-4890572 (238nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000005708GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationISOSGD:S000005708GO_REF:0000024473
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722315
GO:0022627cytosolic small ribosomal subunitISOSGD:S000005708GO_REF:000002465
GO:0005634nucleusIDAPMID:168233722740
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000085sensitive to camptothecin211
expressivity FYPO_EXT:0000003Cell growth assayrps3001ΔNullPECO:0000137, PECO:0000005PMID:19264558
FYPO:0002060viable vegetative cell populationMicroscopyrps3001ΔNullPMID:204732893759
Microscopyrps3001ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrps3001ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
148901864890373
248904264890829

UTRs

Region Coordinates Reference
five_prime_UTR4890186..4890334PMID:21511999
three_prime_UTR4890573..4890829PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04758 Pfam IPR006846 Ribosomal protein S30 3 60 2
PTHR12650 HMMPANTHER 1 61 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.28 Da
Charge 15.50
Isoelectric point 12.21
Molecular weight 6.91 kDa
Number of residues 61
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
22820.28during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
23428.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
32during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
4.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPAC19B12.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC19B12.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC19B12.04 BioGRID Interaction Datasets
Expression Viewer SPAC19B12.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC19B12.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC19B12.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC19B12.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC19B12.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC19B12.04 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC19B12.04 Cell Cycle Data
GEO SPAC19B12.04 GEO profiles
PInt SPAC19B12.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC19B12.04 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC19B12.04 Fission yeast phenotypic data & analysis
SPD / RIKEN01/01B04Orfeome Localization Data
UniProtKB/SwissProtO4295240S ribosomal protein S30
ModBaseO42952Database of comparative protein structure models
STRINGO42952Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59476740S ribosomal protein S30
RefSeq mRNANM_001020194972h- 40S ribosomal protein S30 (rps3001), mRNA
European Nucleotide ArchiveAJ002731ENA EMBL mapping
European Nucleotide ArchiveCAA17057.2ENA Protein Mapping
European Nucleotide ArchiveCAC00552.1ENA Protein Mapping
UniParcUPI0000134F3BUniProt Archive

Literature for rps3001

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014