rps3001 (SPAC19B12.04)


Gene Standard Namerps3001 Characterisation Statusbiological role inferred
Systematic IDSPAC19B12.04 Feature Typeprotein coding
Synonymsrps30-1 Name Description
Product40S ribosomal protein S30 (predicted) Product Size61aa, 6.91 kDa
Genomic Location Chromosome I, 4890186-4890829 (644nt); CDS:4890335-4890572 (238nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
nucleus2692
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
sensitive to camptothecinrps3001Δ248
viable vegetative cell populationrps3001Δ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyrps3001Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons4890186..4890373, 4890426..4890829
Intron4890374..4890425
mRNA4890186..4890829
5' UTR4890186..4890334PMID:21511999
CDS4890335..4890373, 4890426..4890572
3' UTR4890573..4890829PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04758 Pfam IPR006846 Ribosomal protein S30 3 59 2
PTHR12650 HMMPANTHER 1 61 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.28 Da
Charge 15.50
Codon Adaptation Index 0.54
Isoelectric point 12.21
Molecular weight 6.91 kDa
Number of residues 61
Modifications

Protein Modifications

Term NameResidueCount
ubiquitinylated lysineK54 512
Annotation ExtensionEvidenceResidueReference
IDA PMID:26412298
mass spectrometry evidence K54 PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps3001 (SPAC19B12.04)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
22820.28during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
23428.2during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
32during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
4.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in archaea238
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPAC19B12.04 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
External References
Database Identifier Description
NBRP SPAC19B12.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC19B12.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC19B12.04 BioGRID Interaction Datasets
Expression Viewer SPAC19B12.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC19B12.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC19B12.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC19B12.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC19B12.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC19B12.04 Transcriptome Viewer (Bähler Lab)
GEO SPAC19B12.04 GEO profiles
PInt SPAC19B12.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC19B12.04 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC19B12.04 Fission yeast phenotypic data & analysis
Cyclebase SPAC19B12.04.1 Cell Cycle Data
SPD / RIKEN01/01B04Orfeome Localization Data
UniProtKB/SwissProtP0CT6240S ribosomal protein S30-A
ModBaseP0CT62Database of comparative protein structure models
STRINGP0CT62Network display of known and predicted interactions and functional associations
UniProtKB/SwissProtP0CT6340S ribosomal protein S30-B
ModBaseP0CT63Database of comparative protein structure models
STRINGP0CT63Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59476740S ribosomal protein S30
RefSeq mRNANM_001020194972h- 40S ribosomal protein S30 (rps3001), mRNA

Literature for rps3001

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016