SPAC19B12.06c

Synonyms ChromosomeI
Productrhomboid family protease Gene Start4895378
Feature Typeprotein coding Gene End4893974
Name Description CDS Start4895073
Characterisation Statusconserved_unknown CDS End4894099

Ensembl Gene Location
bgs3 SPNCRNA.1034 rps3001 fcp1 > SPAC19B12.06c < SPAC19B12.07c atg4 srp14 sst2
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
148953784894887
248948364894620
348945144894449
448944054893974

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF01694 Pfam Peptidase S54, rhomboid 63 203 33 4
144091 Superfamily 20 209 41.1 7
TMHMM tmhmm Double transmembrane domain 26 48 0.9815 1312
TMHMM tmhmm Double transmembrane domain 70 90 0.99727 1312
TMHMM tmhmm Double transmembrane domain 100 121 0.99678 1312
TMHMM tmhmm Double transmembrane domain 130 150 0.98316 1312
TMHMM tmhmm Double transmembrane domain 158 178 0.63601 1312
TMHMM tmhmm Double transmembrane domain 181 203 0.93148 1312
SIGNALP_EUK Signalp 1 39 0 456

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073
SO:0000065protein N-terminal signal sequenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000065

Protein Properties

Ave. residue weight 110.83 Da
Charge -3.00
Isoelectric point 5.50
Molecular weight 28.59 kDa
Number of residues 258
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005794Golgi apparatusISS SGD:S000006167GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005794
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0030137COPI-coated vesicleISS SGD:S000006167GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0030137

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0004252serine-type endopeptidase activityISS PFAM:PF01694GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0004252
IEAGO_REF:0000002

Warning

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DescriptionSourceAll Genes
gene structure updatedTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in Fungi onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000056
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
stc1LIM-like protein linking chromatin modification to RNAi, Stc1 Affinity Capture-MS

External References

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Database Identifier Description
NBRP SPAC19B12.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC19B12.06c Retrieval of eukaryotic orthologs
BioGrid SPAC19B12.06c BioGRID Interaction Datasets
Bähler Lab SPAC19B12.06c Cell Cycle Expression Profile
Bähler Lab SPAC19B12.06c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC19B12.06c Pheromone response/mating expression profiles
Bähler Lab SPAC19B12.06c Environmental stress expression profiles
Bähler Lab SPAC19B12.06c Bähler Lab Transcriptome Viewer
Cyclebase SPAC19B12.06c Cell Cycle Data
Entrez Gene SPAC19B12.06c Link to Entrez Gene
SPD / RIKEN13/13H12Orfeome Localization Data
UniProtKB/SwissProtQ9P375Uncharacterized rhomboid protein C19B12.06c
ArrayExpressQ9P375Link to ArrayExpress
RefSeq PeptideNP_594769rhomboid family protease
RefSeq mRNANM_001020196972h- rhomboid family protease (SPAC19B12.06c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAC00554ENA Protein Mapping
UniParcUPI00001907DFUniProt Archive

Literature for SPAC19B12.06c

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Search: UK PMC or PubMed