SPAC19B12.11c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC19B12.11c Gene Start4904283
Synonyms Gene End4903418
Productzinc finger protein, human ZNF593 ortholog Gene Length866
Feature Typeprotein coding CDS Start4904176
Name Description CDS End4903743
Characterisation Statusconserved_unknown CDS Length434

Ensembl Gene Location
  1. SPAC19B12.07c
  2. atg4
  3. srp14
  4. sst2
  5. SPAC19B12.11c
  6. yip11
  7. cox1102
  8. rpn502
  9. SPNCRNA.1035
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC19B12.11cdelta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0008270zinc ion bindingIEAIPR007087GO_REF:0000002
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
ISOSGD:S000004064GO_REF:0000024
GO:0005730nucleolusIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
149042834904100
249040404903418

References

Region Start End Reference
three_prime_UTR49037424903418PMID:21511999
three_prime_UTR49037424903418PMID:21511999
five_prime_UTR49042834904177PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF12171 IPR022755 Pfam Zinc finger, double-stranded RNA binding 55 81 3
SM00355 IPR015880 SMART Zinc finger, C2H2-like 56 80 28
PS50157 IPR007087 Prosite Profiles Zinc finger, C2H2 56 85 20
PS00028 IPR007087 Prosite Patterns Zinc finger, C2H2 58 80 28
SSF57667 SuperFamily 43 105 26
PTHR20863:SF2 hmmpanther 1 123 1
PTHR20863 hmmpanther 1 123 2

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000137zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137
PBO:0000153zf-C2H2 typeTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000153

Protein Properties

Ave. residue weight 114.10 Da
Charge 7.50
Isoelectric point 9.49
Molecular weight 14.15 kDa
Number of residues 124
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3485.69PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide2951.83PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.97PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
SPCC18.13tRNA (guanine-N7-)-methyltransferase subunit Trm82 (predicted) Negative GeneticPMID:22681890
SPAC9G1.08cphospholipase (predicted) Negative GeneticPMID:22681890
prz1calcineurin responsive transcription factor Prz1 Negative GeneticPMID:22681890
med13mediator complex subunit Srb9 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC6G9.14RNA-binding protein (predicted) Negative GeneticPMID:22681890
tip1CLIP170 family protein Tip1 Negative GeneticPMID:22681890
git3G-protein coupled receptor Git3 Negative GeneticPMID:22681890
hob3BAR adaptor protein Hob3 Positive GeneticPMID:22681890
tpp1trehalose-6-phosphate phosphatase Tpp1 Negative GeneticPMID:22681890
SPBC36.11sequence orphan Negative GeneticPMID:22681890
rpl240160S ribosomal protein L24 (predicted) Negative GeneticPMID:22681890
emp24COPII-coated vesicle component Emp24 (predicted) Negative GeneticPMID:22681890
hri2eIF2 alpha kinase Hri2 Negative GeneticPMID:22681890
atp11F1-ATPase chaperone Atp11 (predicted) Negative GeneticPMID:18818364
mug154conserved fungal protein Negative GeneticPMID:22681890
elp6elongator complex subunit Elp6 (predicted) Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
SPAP27G11.11cdubious Negative GeneticPMID:22681890
apq12nuclear membrane organization protein Apq12 (predicted) Negative GeneticPMID:22681890
idp1isocitrate dehydrogenase Idp1 (predicted) Negative GeneticPMID:22681890
fep1iron-sensing transcription factor Fep1 Positive GeneticPMID:22681890
lsg1Lsk1 complex gamma subunit (predicted) Negative GeneticPMID:22681890
rps160240S ribosomal protein S16 (predicted) Positive GeneticPMID:22681890
ase1antiparallel microtubule cross-linking factor Ase1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
SPAC17H9.06cconserved eukaryotic protein Negative GeneticPMID:22681890
ccq1telomere maintenance protein Ccq1 Positive GeneticPMID:22681890
puf6Puf family RNA-binding protein Puf6 (predicted) Negative GeneticPMID:22681890
snf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:18818364
bdf1Swr1 complex bromodomain subunit Brf1 Negative GeneticPMID:18818364
SPAC977.15dienelactone hydrolase family Negative GeneticPMID:22681890
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
pnk1DNA kinase/phosphatase Pnk1 Negative GeneticPMID:18818364
SPBC17A3.06phosphoprotein phosphatase (predicted) Negative GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
lub1WD repeat protein Lub1 Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
sde2silencing defective protein Sde2 Negative GeneticPMID:22681890
gdh2NAD-dependent glutamate dehydrogenase Gdh2 (predicted) Negative GeneticPMID:22681890
get1GET complex subunit Get1 (predicted) Negative GeneticPMID:22681890
ght4hexose transporter Ght4 Negative GeneticPMID:22681890
otu1ubiquitin-specific cysteine protease, OTU family, Otu1 Negative GeneticPMID:22681890
pzh1serine/threonine protein phosphatase Pzh1 Negative GeneticPMID:22681890
SPAC27F1.06cFKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Negative GeneticPMID:18818364
lys4homocitrate synthase Positive GeneticPMID:22681890
SPAC24B11.05pyrimidine 5'-nucleotidase (predicted) Negative GeneticPMID:22681890
csk1cyclin-dependent kinase activating kinase Csk1 Negative GeneticPMID:22681890
SPBC9B6.11cCCR4/nocturin family endoribonuclease (predicted) Positive GeneticPMID:22681890
ers1RNA-silencing factor Ers1 Negative GeneticPMID:22681890
rga6Rho-type GTPase activating protein Rga6 (predicted) Negative GeneticPMID:22681890
dni2tetraspan protein Dni2 (predicted) Negative GeneticPMID:22681890
chp1chromodomain protein Chp1 Negative GeneticPMID:18818364
nxt1mRNA export receptor Nxt1 Negative GeneticPMID:22681890
SPCC1840.09NAD dependent epimerase/dehydratase family protein Negative GeneticPMID:22681890
gcd10tRNA (m1A) methyltransferase, translation initiation factor eIF-3 gamma subunit Gcd10 (predicted) Negative GeneticPMID:22681890
grx5monothiol glutaredoxin Grx5 Negative GeneticPMID:22681890
SPBC776.16sequence orphan Positive GeneticPMID:22681890
pob3FACT complex subunit Pob3 Negative GeneticPMID:18818364
SPAC31A2.12arrestin/PY protein 1 (predicted) Negative GeneticPMID:22681890
hrq1RecQ type DNA helicase Hrq1 (predicted) Negative GeneticPMID:22681890
ilv1acetolactate synthase catalytic subunit Negative GeneticPMID:22681890
ssr3SWI/SNF and RSC complex subunit Ssr3 Positive GeneticPMID:18818364
pom1DYRK family protein kinase Pom1 Positive GeneticPMID:18818364
atg20sorting nexin Atg20 (predicted) Positive GeneticPMID:22681890
SPAC24C9.12cglycine hydroxymethyltransferase (predicted) Positive GeneticPMID:22681890
SPCC306.02cRab GTPase binding involved in ER to Golgi vesicle transport (predicted) Negative GeneticPMID:22681890
mex67mRNA export receptor, Tap, nucleoporin Mex67 Negative GeneticPMID:22681890
alf1ATP-dependent microtubule severing protein (predicted) Negative GeneticPMID:22681890
SPAC977.13chydrolase, pseudogene Negative GeneticPMID:22681890
SPBC21B10.08csequence orphan Positive GeneticPMID:22681890
med20mediator complex subunit Med20 Positive GeneticPMID:18818364
ser2phosphoserine phosphatase Ser2 (predicted) Negative GeneticPMID:18818364
fft3fun thirty related protein Fft3 Negative GeneticPMID:18818364
pex13peroxin 13 (predicted) Negative GeneticPMID:22681890
uch1ubiquitin C-terminal hydrolase Uch1 Negative GeneticPMID:18818364
ura1carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1 Negative GeneticPMID:22681890
SPCC126.11cRNA-binding protein, rrm type Negative GeneticPMID:22681890
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
elp1elongator subunit Elp1 (predicted) Positive GeneticPMID:22681890
Positive GeneticPMID:18818364
bhd1folliculin ortholog Bhd1 Negative GeneticPMID:22681890
mpc1mitochondrial pyruvate transmembrane transporter subunit Mpc1 Negative GeneticPMID:22681890
ppk6serine/threonine protein kinase Ppk6 (predicted) Negative GeneticPMID:22681890
SPCC622.15csequence orphan Negative GeneticPMID:18818364
SPBC1348.07S. pombe specific DUF999 protein family 6 Positive GeneticPMID:22681890
snt2Lid2 complex subunit Snt2 Positive GeneticPMID:22681890
srb11cyclin CycC, Srb mediator subunit Srb11 Negative GeneticPMID:18818364
vps20ESCRT III complex subunit Vps20 Positive GeneticPMID:22681890
rpl240260S ribosomal protein L24 (predicted) Negative GeneticPMID:22681890
sgf29SAGA complex subunit Sgf29 Negative GeneticPMID:22681890
shk2PAK-related kinase Shk2 Negative GeneticPMID:18818364
ckb2CK2 family regulatory subunit (predicted) Negative GeneticPMID:22681890
caf5spermine family transmembrane transporter Caf5 Positive GeneticPMID:22681890
elp4elongator complex subunit Elp4 (predicted) Positive GeneticPMID:18818364
aps1diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase Aps1 Negative GeneticPMID:22681890
SPAC694.02DEAD/DEAH box helicase Negative GeneticPMID:22681890
rpt419S proteasome regulatory subunit Rpt4 (predicted) Negative GeneticPMID:22681890
sdh3succinate dehydrogenase (ubiquinone) cytochrome b subunit (predicted) Negative GeneticPMID:22681890
arp8actin-like protein, Ino80 complex subunit Arp8 Negative GeneticPMID:18818364
ddb1damaged DNA binding protein Ddb1 Negative GeneticPMID:22681890
SPAC328.04AAA family ATPase, unknown biological role Negative GeneticPMID:22681890
git5heterotrimeric G protein beta subunit Git5 Negative GeneticPMID:22681890
ftp105Ubp5 interacting protein Ftp105 Negative GeneticPMID:22681890
sat1Golgi membrane exchange factor subunit Sat1 (predicted) Negative GeneticPMID:22681890
pab2poly(A) binding protein Pab2 Negative GeneticPMID:22681890
SPBC56F2.08cRNA-binding protein (predicted) Negative GeneticPMID:22681890
mdm31mitochondrial inner membrane protein Mdm31 (predicted) Negative GeneticPMID:22681890
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:18818364
SPBC1734.07cTRAPP complex subunit Trs85 (predicted) Positive GeneticPMID:18818364
exo1exonuclease I Exo1 Negative GeneticPMID:22681890
SPAC1296.01cphosphoacetylglucosamine mutase (predicted) Positive GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:18818364
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External References
Database Identifier Description
NBRP SPAC19B12.11c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC19B12.11c Retrieval of eukaryotic orthologs
BioGrid SPAC19B12.11c BioGRID Interaction Datasets
Bähler Lab SPAC19B12.11c Cell Cycle Expression Profile
Bähler Lab SPAC19B12.11c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC19B12.11c Pheromone response/mating expression profiles
Bähler Lab SPAC19B12.11c Environmental stress expression profiles
Bähler Lab SPAC19B12.11c Bähler Lab Transcriptome Viewer
Cyclebase SPAC19B12.11c Cell Cycle Data
PInt SPAC19B12.11c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC19B12.11c Entrez Gene
WikiGene2542462zinc finger protein
Uniprot_genenameBUD20
EntrezGene2542462zinc finger protein
SPD / RIKEN03/03F06Orfeome Localization Data
UniProtKB/SwissProtQ9P370Zinc finger protein bud20
ModBaseQ9P370Database of comparative protein structure models
Pfam Protein DomainsQ9P370Pfam Domain Arrangement
RefSeq PeptideNP_594774zinc finger protein
RefSeq mRNANM_001020201972h- zinc finger protein (SPAC19B12.11c), mRNA
European Nucleotide ArchiveCAC00559ENA Protein Mapping
UniParcUPI000006AC09UniProt Archive

Literature for SPAC19B12.11c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013