SPAC19B12.11c

Synonyms ChromosomeI
Productzinc finger protein, human ZNF593 ortholog Gene Start4904283
Feature Typeprotein coding Gene End4903418
Name Description CDS Start4904176
Characterisation Statusconserved_unknown CDS End4903743

Ensembl Gene Location
SPAC19B12.07c atg4 srp14 sst2 > SPAC19B12.11c < yip11 cox1102 rpn502 SPNCRNA.1035
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
149042834904100
249040404903418

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF12171 Pfam Zinc finger, double-stranded RNA binding 55 81 35.5 3
57667 Superfamily 41 107 68.5 22
SM00355 Smart Zinc finger, C2H2-like 56 80 16.6 29
PS50157 PROSITE Zinc finger, C2H2 56 85 9.224 20
PS00028 scanprosite Zinc finger, C2H2 58 80 28

Protein Properties

Ave. residue weight 114.10 Da
Charge 7.50
Isoelectric point 9.49
Molecular weight 14.15 kDa
Number of residues 124
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000004064GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005730nucleolusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005730

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0008270zinc ion bindingIEAGO_REF:0000002Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0008270

Protein Family

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DescriptionSourceAll Genes
zf-C2H2 typeTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000153
zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
lub1WD repeat protein Lub1 Negative Genetic
srb11cyclin CycC, Srb mediator subunit Srb11 Negative Genetic
shk2PAK-related kinase Shk2 Negative Genetic
SPAC27F1.06cFKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Negative Genetic
elp4elongator complex subunit Elp4 (predicted) Positive Genetic
med13mediator complex subunit Srb9 Negative Genetic
med20mediator complex subunit Med20 Positive Genetic
chp1chromodomain protein Chp1 Negative Genetic
ser2phosphoserine phosphatase Ser2 (predicted) Negative Genetic
fft3fun thirty related protein Fft3 Negative Genetic
arp8actin-like protein Arp8 Negative Genetic
uch1ubiquitin C-terminal hydrolase Uch1 Negative Genetic
atp11F1-ATPase chaperone Atp11 (predicted) Negative Genetic
pob3FACT complex component Pob3 Negative Genetic
elp6elongator complex subunit Elp6 (predicted) Positive Genetic
ccr4CCR4-Not complex subunit Ccr4 (predicted) Negative Genetic
iki3elongator subunit Iki3 (predicted) Positive Genetic
ase1antiparallel microtubule cross-linking factor Ase1 Negative Genetic
ssr3SWI/SNF and RSC complex subunit Ssr3 Positive Genetic
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative Genetic
bdf1Swr1 complex bromodomain subunit Brf1 Negative Genetic
snf5SWI/SNF complex subunit Snf5 Negative Genetic
SPBC1734.07cTRAPP complex subunit Trs85 (predicted) Positive Genetic
arp42SWI/SNF and RSC complex subunit Arp42 Negative Genetic
SPCC622.15csequence orphan Negative Genetic
pom1DYRK family protein kinase Pom1 Positive Genetic
pnk1DNA kinase/phosphatase Pnk1 Negative Genetic
hip4histone promoter control protein Hip4 Negative Genetic
reb1RNA polymerase I transcription termination factor Reb1 Negative Genetic


External References

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Database Identifier Description
NBRP SPAC19B12.11c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC19B12.11c Retrieval of eukaryotic orthologs
BioGrid SPAC19B12.11c BioGRID Interaction Datasets
Bähler Lab SPAC19B12.11c Cell Cycle Expression Profile
Bähler Lab SPAC19B12.11c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC19B12.11c Pheromone response/mating expression profiles
Bähler Lab SPAC19B12.11c Environmental stress expression profiles
Bähler Lab SPAC19B12.11c Bähler Lab Transcriptome Viewer
Cyclebase SPAC19B12.11c Cell Cycle Data
Entrez Gene SPAC19B12.11c Link to Entrez Gene
SPD / RIKEN03/03F06Orfeome Localization Data
UniProtKB/SwissProtQ9P370Zinc finger protein bud20
ArrayExpressQ9P370Link to ArrayExpress
RefSeq PeptideNP_594774zinc finger protein
RefSeq mRNANM_001020201972h- zinc finger protein (SPAC19B12.11c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAC00559ENA Protein Mapping
UniParcUPI000006AC09UniProt Archive

Literature for SPAC19B12.11c

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Search: UK PMC or PubMed