SPAC1B3.09c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPAC1B3.09c Feature Typeprotein coding
Synonyms Name Description
ProductNoc2p-Noc3p complex subunit Noc2 family (predicted) Product Size528aa, 60.79 kDa
Genomic Location Chromosome I, 4945814-4944132 (1683nt); CDS:4945814-4944228 (1587nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0000054ribosomal subunit export from nucleusISOSGD:S000005732GO_REF:000002429
GO:0042254ribosome biogenesisISOSGD:S000005732GO_REF:0000024337
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0030690Noc1p-Noc2p complexISOSGD:S000005732GO_REF:00000243
GO:0030691Noc2p-Noc3p complexISOSGD:S000005732GO_REF:00000243
GO:0005730nucleolusISOSGD:S000005732GO_REF:0000024343
IDAPMID:16823372
GO:0005634nucleusIDAPMID:168233722740
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:236978061338
MicroscopySPAC1B3.09cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000310inviable after spore germination, without cell division, with normal germ tube morphologyMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:23697806303
FYPO:0002151inviable sporeMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:23697806465
FYPO:0002273inviable vegetative cell with abnormal cell morphologyMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:23697806743
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
149458144944132

UTRs

Region Coordinates Reference
three_prime_UTR4944227..4944132PMID:18641648
three_prime_UTR4944227..4944132PMID:20118936
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF03715 Pfam IPR005343 Nucleolar complex protein 2 232 526 2
PTHR12687 HMMPANTHER IPR005343 Nucleolar complex protein 2 137 526 2
PTHR12687:SF3 HMMPANTHER 137 526 1
SSF48371 SuperFamily IPR016024 Armadillo-type fold 169 461 130

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.13 Da
Charge 15.50
Isoelectric point 9.22
Molecular weight 60.79 kDa
Number of residues 528
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS79PMID:217125471670
present during mitotic M phase
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
5376during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
3767during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
4969during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
4365during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
1723.69during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
5521during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
4.1during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.86during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC1B3.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1B3.09c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1B3.09c BioGRID Interaction Datasets
Expression Viewer SPAC1B3.09c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1B3.09c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1B3.09c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1B3.09c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1B3.09c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1B3.09c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1B3.09c Cell Cycle Data
GEO SPAC1B3.09c GEO profiles
PInt SPAC1B3.09c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1B3.09c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1B3.09c Fission yeast phenotypic data & analysis
SPD / RIKEN25/25E09Orfeome Localization Data
UniProtKB/SwissProtO13874Uncharacterized NOC2 family protein C1B3.09c
ModBaseO13874Database of comparative protein structure models
STRINGO13874Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594793Noc2p-Noc3p complex subunit Noc2 family (predicted)
RefSeq mRNANM_001020221972h- Noc2p-Noc3p complex subunit Noc2 family (predicted) (SPAC1B3.09c), mRNA
European Nucleotide ArchiveBAA87140.1ENA Protein Mapping
European Nucleotide ArchiveCAB11238.1ENA Protein Mapping
UniParcUPI000013AA9EUniProt Archive

Literature for SPAC1B3.09c

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014