SPAC1B3.09c


Gene Standard NameUnassigned Characterisation Statusbiological role inferred
Systematic IDSPAC1B3.09c Feature Typeprotein coding
Synonyms Name Description
ProductNoc2p-Noc3p complex subunit Noc2 family (predicted) Product Size528aa, 60.79 kDa
Genomic Location Chromosome I, 4945814-4944132 (1683nt); CDS:4945814-4944228 (1587nt)

Ensembl Gene Location
GO Biological Process
Term NameCount
ribosomal subunit export from nucleus28
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Noc1p-Noc2p complex3
Annotation ExtensionEvidenceWith/FromReference
Noc2p-Noc3p complex3
Annotation ExtensionEvidenceWith/FromReference
nucleolus365
Annotation ExtensionEvidenceWith/FromReference
nucleus2692
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationSPAC1B3.09cΔ1451

Cell Phenotype

Term NameGenotypesCount
inviable after spore germination, without cell division, with normal germ tube morphologySPAC1B3.09cΔ303
inviable sporeSPAC1B3.09cΔ476
inviable vegetative cell with abnormal cell morphologySPAC1B3.09cΔ390
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons4945814..4944132
mRNA4945814..4944132
CDS4945814..4944228
3' UTR4944227..4944132PMID:18641648
3' UTR4944227..4944132PMID:20118936
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF03715 Pfam IPR005343 Nucleolar complex protein 2 231 525 2
PTHR12687 HMMPANTHER IPR005343 Nucleolar complex protein 2 217 524 2
SSF48371 SuperFamily IPR016024 Armadillo-type fold 169 461 130

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.13 Da
Charge 15.50
Codon Adaptation Index 0.41
Isoelectric point 9.22
Molecular weight 60.79 kDa
Number of residues 528
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1676
present during mitotic M phaseS79
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S79 PMID:21712547
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPAC1B3.09c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
5376during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
3767during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
4969during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
4365during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
1723.69during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
5521during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
4.1during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.86during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2506
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPAC1B3.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1B3.09c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1B3.09c BioGRID Interaction Datasets
Expression Viewer SPAC1B3.09c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1B3.09c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1B3.09c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1B3.09c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1B3.09c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1B3.09c Transcriptome Viewer (Bähler Lab)
GEO SPAC1B3.09c GEO profiles
PInt SPAC1B3.09c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1B3.09c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1B3.09c Fission yeast phenotypic data & analysis
Cyclebase SPAC1B3.09c.1 Cell Cycle Data
SPD / RIKEN25/25E09Orfeome Localization Data
UniProtKB/SwissProtO13874Uncharacterized NOC2 family protein C1B3.09c
ModBaseO13874Database of comparative protein structure models
STRINGO13874Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594793Noc2p-Noc3p complex subunit Noc2 family (predicted)
RefSeq mRNANM_001020221972h- Noc2p-Noc3p complex subunit Noc2 family (predicted) (SPAC1B3.09c), mRNA

Literature for SPAC1B3.09c

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016