Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPAC1B3.09c Feature Typeprotein coding
Synonyms Name Description
ProductNoc2p-Noc3p complex subunit Noc2 family (predicted) Product Size528aa, 60.79 kDa
Genomic Location Chromosome I, 4945814-4944132 (1683nt); CDS:4945814-4944228 (1587nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0000054ribosomal subunit export from nucleusISOSGD:S000005732GO_REF:000002428
GO:0042254ribosome biogenesisISOSGD:S000005732GO_REF:0000024327
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0030690Noc1p-Noc2p complexISOSGD:S000005732GO_REF:00000243
GO:0030691Noc2p-Noc3p complexISOSGD:S000005732GO_REF:00000243
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:236978061309

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000310inviable after spore germination, without cell division, with normal germ tube morphologyMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:23697806303
FYPO:0002151inviable sporeMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:23697806447
FYPO:0002273inviable vegetative cell with abnormal cell morphologyMicroscopySPAC1B3.09cΔNullPECO:0000005, PECO:0000137PMID:23697806730
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Start End Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF03715 Pfam IPR005343 Nucleolar complex protein 2 232 526 2
PTHR12687:SF3 HMMPANTHER 137 526 1
PTHR12687 HMMPANTHER IPR005343 Nucleolar complex protein 2 137 526 2
SSF48371 SuperFamily IPR016024 169 461 130
Low complexity (SEG) seg 257 270

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.13 Da
Charge 15.50
Isoelectric point 9.22
Molecular weight 60.79 kDa
Number of residues 528
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
1723.69during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.86during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
4.1during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
predominantly single copy (one to one)3080
conserved in fungi4564
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3394
conserved in eukaryotes only2485

Manually curated orthologous groups


Orthologs in Compara

External References
Database Identifier Description
NBRP SPAC1B3.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1B3.09c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1B3.09c BioGRID Interaction Datasets
Expression Viewer SPAC1B3.09c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1B3.09c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1B3.09c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1B3.09c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1B3.09c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1B3.09c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1B3.09c Cell Cycle Data
GEO SPAC1B3.09c GEO profiles
PInt SPAC1B3.09c Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene2542229Noc2p-Noc3p complex subunit Noc2 family (predicted)
EntrezGene2542229Noc2p-Noc3p complex subunit Noc2 family (predicted)
SPD / RIKEN25/25E09Orfeome Localization Data
UniProtKB/SwissProtO13874Uncharacterized NOC2 family protein C1B3.09c
ModBaseO13874Database of comparative protein structure models
StringO13874Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594793Noc2p-Noc3p complex subunit Noc2 family (predicted)
RefSeq mRNANM_001020221972h- Noc2p-Noc3p complex subunit Noc2 family (predicted) (SPAC1B3.09c), mRNA
European Nucleotide ArchiveBAA87140ENA Protein Mapping
European Nucleotide ArchiveCAB11238ENA Protein Mapping
UniParcUPI000013AA9EUniProt Archive

Literature for SPAC1B3.09c

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014