SPAC1B3.09c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1B3.09c Gene Start4945814
Synonyms Gene End4944132
ProductNoc2p-Noc3p complex subunit Noc2 family (predicted) Gene Length1683
Feature Typeprotein coding CDS Start4945814
Name Description CDS End4944228
Characterisation Statusbiological_role_inferred CDS Length1587

Ensembl Gene Location
  1. SPNCRNA.1038
  2. SPAC1B3.06c
  3. vps28
  4. SPAC1B3.08
  5. coa3
  6. SPAC1B3.09c
  7. SPAC1B3.10c
  8. ypt4
  9. SPAC1B3.20
  10. rpb10
  11. SPAC1B3.13
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC1B3.09cdelta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0000054ribosomal subunit export from nucleusISOSGD:S000005732GO_REF:0000024
GO:0042254ribosome biogenesisISOSGD:S000005732GO_REF:0000024
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:16823372
ISOSGD:S000005732GO_REF:0000024
GO:0030690Noc1p-Noc2p complexISOSGD:S000005732GO_REF:0000024
GO:0030691Noc2p-Noc3p complexISOSGD:S000005732GO_REF:0000024
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
149458144944132

References

Region Start End Reference
three_prime_UTR49442274944132PMID:20118936
three_prime_UTR49442274944132PMID:20118936
three_prime_UTR49442274944132PMID:18641648
three_prime_UTR49442274944132PMID:18641648
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03715 IPR005343 Pfam Nucleolar complex protein 2 232 526 2
SSF48371 IPR016024 SuperFamily 169 461 130
PTHR12687 IPR005343 hmmpanther Nucleolar complex protein 2 102 526 2
PTHR12687:SF3 hmmpanther 102 526 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.13 Da
Charge 15.50
Isoelectric point 9.22
Molecular weight 60.79 kDa
Number of residues 528
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1723.69PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.86PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide4.1PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
External References
Database Identifier Description
NBRP SPAC1B3.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1B3.09c Retrieval of eukaryotic orthologs
BioGrid SPAC1B3.09c BioGRID Interaction Datasets
Bähler Lab SPAC1B3.09c Cell Cycle Expression Profile
Bähler Lab SPAC1B3.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1B3.09c Pheromone response/mating expression profiles
Bähler Lab SPAC1B3.09c Environmental stress expression profiles
Bähler Lab SPAC1B3.09c Bähler Lab Transcriptome Viewer
Cyclebase SPAC1B3.09c Cell Cycle Data
PInt SPAC1B3.09c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1B3.09c Entrez Gene
WikiGene2542229Noc2p-Noc3p complex subunit Noc2 family (predicted)
EntrezGene2542229Noc2p-Noc3p complex subunit Noc2 family (predicted)
SPD / RIKEN25/25E09Orfeome Localization Data
UniProtKB/SwissProtO13874Uncharacterized NOC2 family protein C1B3.09c
ModBaseO13874Database of comparative protein structure models
Pfam Protein DomainsO13874Pfam Domain Arrangement
RefSeq PeptideNP_594793Noc2p-Noc3p complex subunit Noc2 family (predicted)
RefSeq mRNANM_001020221972h- Noc2p-Noc3p complex subunit Noc2 family (predicted) (SPAC1B3.09c), mRNA
European Nucleotide ArchiveBAA87140ENA Protein Mapping
European Nucleotide ArchiveCAB11238ENA Protein Mapping
UniParcUPI000013AA9EUniProt Archive

Literature for SPAC1B3.09c
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013