SPAC1B3.10c

Synonyms ChromosomeI
ProductSEL1 repeat protein, unknown biological role Gene Start4948084
Feature Typeprotein coding Gene End4946090
Name Description CDS Start4948084
Characterisation Statusconserved_unknown CDS End4946090

Ensembl Gene Location
vps28 SPAC1B3.08 tam3 SPAC1B3.09c > SPAC1B3.10c < ypt4 SPAC1B3.20 rpb10 SPAC1B3.13 vma3
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
149480844946090

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF08238 Pfam Sel1-like 605 626 5.9 6
PF08238 Pfam Sel1-like 565 597 29.6 6
PF08238 Pfam Sel1-like 142 178 9.5 6
PF08238 Pfam Sel1-like 375 404 10.2 6
PF08238 Pfam Sel1-like 342 371 9.9 6
PF08238 Pfam Sel1-like 549 563 8.2 6
PF08238 Pfam Sel1-like 411 439 7.6 6
PF08238 Pfam Sel1-like 447 471 4 6
81901 Superfamily 86 207 33.5 9
81901 Superfamily 339 521 57.9 9
81901 Superfamily 488 638 57.2 9
SM00671 Smart Sel1-like 564 599 42.8 7
SM00671 Smart Sel1-like 337 372 28.6 7
SM00671 Smart Sel1-like 601 636 24 7
SM00671 Smart Sel1-like 373 409 19.5 7
SM00671 Smart Sel1-like 442 477 17.5 7
SM00671 Smart Sel1-like 141 178 16.8 7
SM00671 Smart Sel1-like 410 441 5.6 7
SM00671 Smart Sel1-like 179 214 5.4 7
TMHMM tmhmm Double transmembrane domain 5 27 0.76986 1312
SIGNALP_EUK Signalp 1 36 0 456

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000065protein N-terminal signal sequenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000065

Protein Properties

Ave. residue weight 115.82 Da
Charge -9.00
Isoelectric point 5.59
Molecular weight 76.91 kDa
Number of residues 664
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Protein Family

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DescriptionSourceAll Genes
SEL1 repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000212

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094


External References

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Database Identifier Description
NBRP SPAC1B3.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1B3.10c Retrieval of eukaryotic orthologs
BioGrid SPAC1B3.10c BioGRID Interaction Datasets
Bähler Lab SPAC1B3.10c Cell Cycle Expression Profile
Bähler Lab SPAC1B3.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1B3.10c Pheromone response/mating expression profiles
Bähler Lab SPAC1B3.10c Environmental stress expression profiles
Bähler Lab SPAC1B3.10c Bähler Lab Transcriptome Viewer
Cyclebase SPAC1B3.10c Cell Cycle Data
Entrez Gene SPAC1B3.10c Link to Entrez Gene
SPD / RIKEN37/37F03Orfeome Localization Data
UniProtKB/SwissProtO13875Uncharacterized Sel1-like repeat-containing protein C1B3.10c
ArrayExpressO13875Link to ArrayExpress
RefSeq PeptideNP_594794Sel1-like repeat-containing protein
RefSeq mRNANM_001020222972h- Sel1-like repeat-containing protein (SPAC1B3.10c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB11247ENA Protein Mapping
UniParcUPI0001B062A1UniProt Archive

Literature for SPAC1B3.10c

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Search: UK PMC or PubMed