SPAC1B9.03c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1B9.03c Gene Start2406661
SynonymsSPAC6B12.01 Gene End2408084
ProductRNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted) Gene Length1424
Feature Typeprotein coding CDS Start2406664
Name Description CDS End2407951
Characterisation Statusbiological_role_inferred CDS Length1288

Ensembl Gene Location
  1. seh1
  2. nxt2
  3. sck1
  4. SPNCRNA.823
  5. SPAC1B9.03c
  6. mus7
  7. SPAC6B12.03c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC1B9.03cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0019843rRNA bindingISOSGD:S000001108GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0000027ribosomal large subunit assemblyISOSGD:S000001108GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005730nucleolusIDAPMID:16823372
ISOSGD:S000001108GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
124066612406687
224067462406805
324068662408084

References

Region Start End Reference
three_prime_UTR24079522408084PMID:21511999
five_prime_UTR24066612406663PMID:21511999
three_prime_UTR24079522408084PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04427 IPR007109 Pfam Brix domain 30 303 5
SM00879 IPR007109 SMART Brix domain 29 303 5
PS50833 IPR007109 Prosite Profiles Brix domain 28 309 5
PTHR12661:SF3 hmmpanther 2 387 1
PTHR12661 hmmpanther 2 387 1

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517

Protein Properties

Ave. residue weight 113.78 Da
Charge 26.50
Isoelectric point 10.47
Molecular weight 44.26 kDa
Number of residues 389
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2758.67PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.58PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in archaea
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC1B9.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1B9.03c Retrieval of eukaryotic orthologs
BioGrid SPAC1B9.03c BioGRID Interaction Datasets
Bähler Lab SPAC1B9.03c Cell Cycle Expression Profile
Bähler Lab SPAC1B9.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1B9.03c Pheromone response/mating expression profiles
Bähler Lab SPAC1B9.03c Environmental stress expression profiles
Bähler Lab SPAC1B9.03c Bähler Lab Transcriptome Viewer
Cyclebase SPAC1B9.03c Cell Cycle Data
PInt SPAC1B9.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1B9.03c Entrez Gene
WikiGene2542610RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)
EntrezGene2542610RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)
SPD / RIKEN16/16H05Orfeome Localization Data
UniProtKB/SwissProtO14206Brix domain-containing protein C1B9.03c
ModBaseO14206Database of comparative protein structure models
Pfam Protein DomainsO14206Pfam Domain Arrangement
RefSeq PeptideNP_593755RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)
RefSeq mRNANM_001019185972h- RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted) (SPAC1B9.03c), mRNA
European Nucleotide ArchiveCAB53054ENA Protein Mapping
UniParcUPI000013A934UniProt Archive

Literature for SPAC1B9.03c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013