byr1 (SPAC1D4.13)


Gene Standard Namebyr1 Characterisation Statuspublished
Systematic IDSPAC1D4.13 Feature Typeprotein coding
Synonyms Name DescriptionSTErile,
BYpass of Ras
ProductMAP kinase kinase Byr1 Product Size340aa, 38.19 kDa
Genomic Location Chromosome I, 667815-669742 (1928nt); CDS:668153-669175 (1023nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
ATP binding559
Annotation ExtensionEvidenceWith/FromReference
MAP kinase kinase activity3
Annotation ExtensionEvidenceWith/FromReference
protein binding862
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
ascospore formation61
Annotation ExtensionEvidenceWith/FromReference
conjugation with cellular fusion115
Annotation ExtensionEvidenceWith/FromReference
MAPK cascade involved in ascospore formation5
Annotation ExtensionEvidenceWith/FromReference
MAPK cascade involved in conjugation with cellular fusion6
Annotation ExtensionEvidenceWith/FromReference
mitotic cell cycle arrest in response to pheromone6
Annotation ExtensionEvidenceWith/FromReference
pheromone-dependent signal transduction involved in conjugation with cellular fusion19
Annotation ExtensionEvidenceWith/FromReference
protein phosphorylation129
Annotation ExtensionEvidenceWith/FromReference
signal transduction involved in conjugation with cellular fusion29
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cell division site312
Annotation ExtensionEvidenceWith/FromReference
cell tip204
Annotation ExtensionEvidenceWith/FromReference
cytosol2306
Annotation ExtensionEvidenceWith/FromReference
nucleus2690
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
decreased mating efficiencybyr1Δ269
decreased septation indexbyr1Δ20
increased cell population growth rate on glucose carbon sourcebyr1Δ12
normal growth on glucose carbon sourceK93M (K93M)263
E229K (E229K)
normal growth on thiabendazolebyr1Δ21
normal mating efficiencybyr1+28
viable vegetative cell populationbyr1Δ3831

Cell Phenotype

Term NameGenotypesCount
abnormal response to pheromoneste1-K2225
ste1-OG15
ste3-JM66
abolished sporulationhomozygous diploid (byr1::LEU2/byr1::LEU2)54
byr1-/byr1- (homozygous diploid)
decreased concentration of P-factor in growth mediumste3-JM669
ste1-K22
ste1-OG15
decreased protein level during cellular response to nitrogen starvation21
affecting mat2-Pisterilebyr1
decreased protein tyrosine phosphorylation10
affecting spk1byr1Δ
normal mRNA level during vegetative growth16
affecting ras1K93M (K93M)
normal protein localization to cell division site32
affecting bob1byr1Δ
normal protein localization to cell tip24
affecting byr1byr1Δ
normal vegetative cell morphologybyr1Δ562
RNA absent from cell during nitrogen starvation15
affecting fus1byr1Δ
sterileste3-JM6661
K93M (K93M)
E229K (E229K)
byr1Δ
ste1-OG15
viable vegetative cellbyr1Δ3647
viable vegetative cell with normal cell morphologybyr1Δ3099
K93M (K93M)
E229K (E229K)

FYPO Multi-allele Phenotypes

Population Phenotype

Term NameGenotypes
decreased mating efficiencyras1-S40, byr1+
normal mating efficiencybob1Δ, byr1+

Cell Phenotype

Term NameGenotypes
abnormal sporulationbyr1-/byr1- (homozygous diploid), byr2+
meiosis and sporulation in haploidpat1-114, ste1-OG15
ste3-JM66, pat1-114
sterilebyr1Δ, byr2+
byr1Δ, bob1+
zfs1+, byr1Δ
Target Of
OntologyRelationshipGeneProduct
FYPO affected by mutation in ras1 GTPase Ras1
GO substrate of byr2 MAP kinase kinase kinase Byr2
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons667815..669742
5' UTR667815..668152PMID:21511999
3' UTR669176..669742PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00069 Pfam IPR000719 Protein kinase domain 67 320 108
SM00220 SMART IPR002290 Serine/threonine/dual specificity protein kinase, catalytic domain 66 320 107
PS50011 Prosite Profiles IPR000719 Protein kinase domain 66 320 110
PS00107 Prosite Patterns IPR017441 Protein kinase, ATP binding site 72 93 73
PS00108 Prosite Patterns IPR008271 Serine/threonine-protein kinase, active site 182 194 97
PTHR24361 HMMPANTHER 60 334 14
PTHR24361:SF408 HMMPANTHER 60 334 1
3.30.200.20 Gene3D RIO kinase 63 127 111
1.10.510.10 Gene3D RIO kinase 128 323 112
SSF56112 SuperFamily IPR011009 Protein kinase-like domain 66 326 127
Coil ncoils Predicted coiled-coil protein (DUF2205) 27 47 1050

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.32 Da
Charge 5.00
Codon Adaptation Index 0.40
Isoelectric point 7.52
Molecular weight 38.19 kDa
Number of residues 340
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelpresent during GO:0072690Northern assay evidencePMID:2300054
unchanged during GO:0060274Northern assay evidencePMID:2300054

Quantitative Gene Expression

View graphical display of gene expression data for byr1 (SPAC1D4.13)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
4426during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
3354.33during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.7during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.84during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Complementation
DescriptionQualifierReference
functionally complements S. cerevisiae STE7partial PMID:8443406
Taxonomic Conservation
DescriptionQualifierReferenceCount
orthologs cannot be distinguished129
conserved in fungi4604
conserved in eukaryotes4514
conserved in metazoa3422
conserved in vertebrates3397
conserved in eukaryotes only2504
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load gene that interact physically with SPAC1D4.13 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
binds activation domain construct withmoc3transcription factor Moc3 Two-hybridPMID:23695164
binds activation domain construct withspk1MAP kinase Spk1 Two-hybridPMID:9660817
binds activation domain construct withcbh1kinetochore protein, CENP-B homolog Cbh1 Two-hybridPMID:23695164
binds activation domain construct withcbh2CENP-B homolog Cbh2 Two-hybridPMID:23695164
binds activation domain construct withbyr2MAP kinase kinase kinase Byr2 Two-hybridPMID:9315645
binds activation domain construct withSPBC56F2.07cribosome biogenesis factor recycling AAA family ATPase (predicted) Two-hybridPMID:23695164
binds activation domain construct withbob1prefoldin subunit 5 (predicted) Two-hybridPMID:11683500
binds DNA-binding domain construct withbob1prefoldin subunit 5 (predicted) Two-hybridPMID:11683500
affinity capturesbob1prefoldin subunit 5 (predicted) Affinity Capture-WesternPMID:11683500
Genetic Interactions

Source: BioGRID

Load gene that interact genetically with SPAC1D4.13 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
overexpression rescuesras1GTPase Ras1 Dosage RescuePMID:3042386
rescueszfs1CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism Phenotypic SuppressionPMID:8534915
rescuesste4adaptor protein Ste4 Phenotypic SuppressionPMID:8816472
rescuesras1GTPase Ras1 Phenotypic SuppressionPMID:1515675
rescuesgpa1G-protein alpha subunit Phenotypic SuppressionPMID:8443406
rescuesbyr2MAP kinase kinase kinase Byr2 Phenotypic SuppressionPMID:15713656
synthetic lethal withfan1Fanconi-associated nuclease Fan1 Synthetic LethalityPMID:24192486
rescued bysla1La protein homolog Phenotypic SuppressionPMID:14665462
synthetic growth defect withwis1MAP kinase kinase Wis1 Synthetic Growth DefectPMID:8557102
External References
Database Identifier Description
NBRP SPAC1D4.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1D4.13 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1D4.13 BioGRID Interaction Datasets
Expression Viewer SPAC1D4.13 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1D4.13 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1D4.13 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1D4.13 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1D4.13 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1D4.13 Transcriptome Viewer (Bähler Lab)
GEO SPAC1D4.13 GEO profiles
PInt SPAC1D4.13 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1D4.13 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1D4.13 Fission yeast phenotypic data & analysis
Cyclebase SPAC1D4.13.1 Cell Cycle Data
IntEnz2.7.1.-Integrated relational Enzyme database
Rhea2.7.1.-Annotated reactions database
SPD / RIKEN15/15C10Orfeome Localization Data
UniProtKB/SwissProtP10506Protein kinase byr1
ModBaseP10506Database of comparative protein structure models
STRINGP10506Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593026MAP kinase kinase Byr1
RefSeq mRNANM_001018425972h- MAP kinase kinase Byr1 (byr1), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveX07445ENA EMBL mapping
European Nucleotide ArchiveCAA30326ENA Protein Mapping
European Nucleotide ArchiveCAA93222ENA Protein Mapping
UniParcUPI0000126B8FUniProt Archive

Literature for byr1

Search: Europe PMC or PubMed

Release Version: PomBase:30_57 - 27 Jan 2016