SPAC1F12.07

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1F12.07 Gene Start3815681
Synonyms Gene End3817165
Productphosphoserine aminotransferase (predicted) Gene Length1485
Feature Typeprotein coding CDS Start3815853
Name Description CDS End3817022
Characterisation Statusbiological_role_inferred CDS Length1170

Ensembl Gene Location
  1. SPAC1F12.02c
  2. SPAC1F12.04c
  3. SPAC1F12.05
  4. SPAC1F12.06c
  5. SPAC1F12.07
  6. SPAC1F12.08
  7. SPNCRNA.937
  8. gpi17
  9. SPAC1F12.10c
  10. SPAC4H3.01
  11. SPAC4H3.17
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC1F12.07delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004648O-phospho-L-serine:2-oxoglutarate aminotransferase activityISOSGD:S000005710GO_REF:0000024
GO:0030170pyridoxal phosphate bindingIEAIPR015421, IPR015422GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006564L-serine biosynthetic processISOSGD:S000005710GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmISSUniProtKB:P33330GO_REF:0000001
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
138156813817165

References

Region Start End Reference
three_prime_UTR38170233817165PMID:21511999
three_prime_UTR38170233817165PMID:21511999
five_prime_UTR38156813815852PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00266 IPR000192 Pfam Aminotransferase, class V/Cysteine desulfurase 7 374 5
PS00595 IPR020578 Prosite Patterns Aminotransferase, class V/Cysteine desulfurase 206 225 2
G3DSA:3.90.1150.10 IPR015422 Gene3D 286 387 23
G3DSA:3.40.640.10 IPR015421 Gene3D 19 284 31
SSF53383 IPR015424 SuperFamily 7 387 31
PIRSF000525 IPR022278 PIRSF Phosphoserine aminotransferase 1 388 1
PTHR21152:SF1 IPR003248 hmmpanther 1 388 1
PTHR21152 hmmpanther 1 388 1
TIGR01364 IPR003248 tigrfam Phosphoserine aminotransferase, subgroup 7 387 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 110.02 Da
Charge -0.50
Isoelectric point 6.46
Molecular weight 42.80 kDa
Number of residues 389
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide27935.96PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide73827.05PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.9PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide13PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:22119525
stc1LIM-like protein linking chromatin modification to RNAi, Stc1 Affinity Capture-MSPMID:20211136
far8SIP/FAR complex striatin subunit, Far8/Csc3 Affinity Capture-MSPMID:22119525
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
cwf2RNA-binding protein Cwf2 Affinity Capture-MSPMID:21386897
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External References
Database Identifier Description
NBRP SPAC1F12.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1F12.07 Retrieval of eukaryotic orthologs
BioGrid SPAC1F12.07 BioGRID Interaction Datasets
Bähler Lab SPAC1F12.07 Cell Cycle Expression Profile
Bähler Lab SPAC1F12.07 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1F12.07 Pheromone response/mating expression profiles
Bähler Lab SPAC1F12.07 Environmental stress expression profiles
Bähler Lab SPAC1F12.07 Bähler Lab Transcriptome Viewer
Cyclebase SPAC1F12.07 Cell Cycle Data
PInt SPAC1F12.07 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1F12.07 Entrez Gene
KEGGMAP00260
KEGGMAP00750
IntEnz2.6.1.52
WikiGene2542269phosphoserine aminotransferase (predicted)
EntrezGene2542269phosphoserine aminotransferase (predicted)
SPD / RIKEN18/18E05Orfeome Localization Data
UniProtKB/SwissProtQ10349Putative phosphoserine aminotransferase
ModBaseQ10349Database of comparative protein structure models
Pfam Protein DomainsQ10349Pfam Domain Arrangement
RefSeq PeptideNP_594333phosphoserine aminotransferase (predicted)
RefSeq mRNANM_001019754972h- phosphoserine aminotransferase (predicted) (SPAC1F12.07), mRNA
European Nucleotide ArchiveCAA93811ENA Protein Mapping
UniParcUPI0000135888UniProt Archive

Literature for SPAC1F12.07
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013