Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPAC1F7.10 Feature Typeprotein coding
Synonyms Name Description
Producthydantoin racemase family (predicted) Product Size238aa, 25.43 kDa
Genomic Location Chromosome I, 4243421-4244823 (1403nt); CDS:4243969-4244685 (717nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
racemase activity, acting on amino acids and derivatives7
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC1F7.10ΔNullPMID:204732893759
MicroscopySPAC1F7.10ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001MicroscopySPAC1F7.10ΔNullPECO:0000005, PECO:0000137PMID:23697806
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Coordinates Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01177 Pfam IPR015942 Asp/Glu/hydantoin racemase 4 215 2 Gene3D IPR001920 Asp/Glu racemase 141 207 2
SSF53681 SuperFamily IPR001920 Asp/Glu racemase 161 222 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 106.85 Da
Charge -2.50
Isoelectric point 5.62
Molecular weight 25.43 kDa
Number of residues 238
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
4095during GO:0000080PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
3727during GO:0000084PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
4876during GO:0000085PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
3019during GO:0000087PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
3740.41during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
3410during GO:0072690PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
4023.96during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.9during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
0.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
predominantly single copy (one to one)3092
conserved in fungi4600
conserved in bacteria1000

Manually curated orthologous groups


Orthologs in Compara

Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
xap5xap-5-like protein Positive GeneticPMID:24957674
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
gcn2eIF2 alpha kinase Gcn2 Negative GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Positive GeneticPMID:22681890
fft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC1F7.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1F7.10 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1F7.10 BioGRID Interaction Datasets
Expression Viewer SPAC1F7.10 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1F7.10 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1F7.10 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1F7.10 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1F7.10 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1F7.10 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1F7.10 Cell Cycle Data
GEO SPAC1F7.10 GEO profiles
PInt SPAC1F7.10 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1F7.10 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC1F7.10 Fission yeast phenotypic data & analysis
SPD / RIKEN08/08E04Orfeome Localization Data
UniProtKB/SwissProtQ09921Uncharacterized protein C1F7.10
ModBaseQ09921Database of comparative protein structure models
STRINGQ09921Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594496hydantoin racemase family (predicted)
RefSeq mRNANM_001019925972h- hydantoin racemase family (predicted) (SPAC1F7.10), mRNA
European Nucleotide ArchiveCAA91957.1ENA Protein Mapping
UniParcUPI000013A105UniProt Archive

Literature for SPAC1F7.10

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014