SPAC1F7.10


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPAC1F7.10 Feature Typeprotein coding
Synonyms Name Description
Producthydantoin racemase family (predicted) Product Size238aa, 25.43 kDa
Genomic Location Chromosome I, 4243421-4244823 (1403nt); CDS:4243969-4244685 (717nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0036361racemase activity, acting on amino acids and derivativesIEAIPR015942GO_REF:00000027
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722319
GO:0005634nucleusIDAPMID:168233722737
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPAC1F7.10ΔNullPMID:204732893751
MicroscopySPAC1F7.10ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001MicroscopySPAC1F7.10ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
142434214244823
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01177 Pfam IPR015942 Asp/Glu/hydantoin racemase 4 215 2
3.40.50.1860 Gene3D IPR001920 Asp/Glu racemase 141 207 2
SSF53681 SuperFamily IPR001920 Asp/Glu racemase 161 222 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 106.85 Da
Charge -2.50
Isoelectric point 5.62
Molecular weight 25.43 kDa
Number of residues 238
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
4095during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
3727during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
4876during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
3019during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
3740.41during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
3410during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
4023.96during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.9during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4599
conserved in bacteria1002
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
xap5xap-5-like protein Positive GeneticPMID:24957674
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
gcn2eIF2 alpha kinase Gcn2 Negative GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Positive GeneticPMID:22681890
fft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC1F7.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1F7.10 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC1F7.10 BioGRID Interaction Datasets
Expression Viewer SPAC1F7.10 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC1F7.10 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC1F7.10 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC1F7.10 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC1F7.10 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC1F7.10 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC1F7.10 Cell Cycle Data
GEO SPAC1F7.10 GEO profiles
PInt SPAC1F7.10 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC1F7.10 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN08/08E04Orfeome Localization Data
UniProtKB/SwissProtQ09921Uncharacterized protein C1F7.10
ModBaseQ09921Database of comparative protein structure models
STRINGQ09921Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594496hydantoin racemase family (predicted)
RefSeq mRNANM_001019925972h- hydantoin racemase family (predicted) (SPAC1F7.10), mRNA
European Nucleotide ArchiveCAA91957.1ENA Protein Mapping
MetaCycPWY-6386UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MetaCycPWY-6387UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing)
UniParcUPI000013A105UniProt Archive
UniPathwayUPA00219Cell wall biogenesis; peptidoglycan biosynthesis

Literature for SPAC1F7.10

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014