SPAC1F7.10

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC1F7.10 Gene Start4243421
Synonyms Gene End4244823
Producthydantoin racemase family (predicted) Gene Length1403
Feature Typeprotein coding CDS Start4243969
Name Description CDS End4244685
Characterisation Statusconserved_unknown CDS Length717

Ensembl Gene Location
  1. fio1
  2. snoR54b
  3. SPRRNA.20
  4. SPAC1F7.09c
  5. SPAC1F7.10
  6. SPAC1F7.11c
  7. yak3
  8. rpl801
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC1F7.10delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0036361racemase activity, acting on amino acids and derivativesIEAIPR015942GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006807nitrogen compound metabolic processIEAIPR015942GO_REF:0000002
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
142434214244823

References

Region Start End Reference
three_prime_UTR42446864244823PMID:21511999
three_prime_UTR42446864244823PMID:21511999
five_prime_UTR42434214243968PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01177 IPR015942 Pfam Asp/Glu/hydantoin racemase 4 216 2
SSF53681 IPR001920 SuperFamily 161 222 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 106.85 Da
Charge -2.50
Isoelectric point 5.62
Molecular weight 25.43 kDa
Number of residues 238
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide4023.96PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3740.41PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.9PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.9PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in bacteria
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Positive GeneticPMID:22681890
gcn2eIF2 alpha kinase Gcn2 Negative GeneticPMID:22681890
fft3fun thirty related protein Fft3 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC1F7.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC1F7.10 Retrieval of eukaryotic orthologs
BioGrid SPAC1F7.10 BioGRID Interaction Datasets
Bähler Lab SPAC1F7.10 Cell Cycle Expression Profile
Bähler Lab SPAC1F7.10 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC1F7.10 Pheromone response/mating expression profiles
Bähler Lab SPAC1F7.10 Environmental stress expression profiles
Bähler Lab SPAC1F7.10 Bähler Lab Transcriptome Viewer
Cyclebase SPAC1F7.10 Cell Cycle Data
PInt SPAC1F7.10 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC1F7.10 Entrez Gene
WikiGene2541822hydantoin racemase family (predicted)
EntrezGene2541822hydantoin racemase family (predicted)
SPD / RIKEN08/08E04Orfeome Localization Data
UniProtKB/SwissProtQ09921Uncharacterized protein C1F7.10
ModBaseQ09921Database of comparative protein structure models
Pfam Protein DomainsQ09921Pfam Domain Arrangement
RefSeq PeptideNP_594496hydantoin racemase family (predicted)
RefSeq mRNANM_001019925972h- hydantoin racemase family (predicted) (SPAC1F7.10), mRNA
European Nucleotide ArchiveCAA91957ENA Protein Mapping
UniParcUPI000013A105UniProt Archive

Literature for SPAC1F7.10
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013