rrn10 (SPAC22E12.08)

Gene Standard Namerrn10 ChromosomeI
Systematic IDSPAC22E12.08 Gene Start5033373
Synonyms Gene End5034586
ProductRNA polymerase I upstream activation factor complex subunit Rrn10 Gene Length1214
Feature Typeprotein coding CDS Start5033478
Name Description CDS End5033823
Characterisation Statuspublished CDS Length346

Ensembl Gene Location
  1. rer1
  2. gmh3
  3. SPNCRNA.1043
  4. rna1
  5. rrn10
  6. krp1
  7. etp1
  8. set3
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopyrrn10delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0000182rDNA bindingTASPMID:12490702
GO:0001168RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activityIDAPMID:12490702
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0045943positive regulation of transcription from RNA polymerase I promoterIMPPMID:12490702
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0000500RNA polymerase I upstream activating factor complexNASGO_REF:0000051
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:12490702
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
150333735033603
250336565034586

References

Region Start End Reference
three_prime_UTR50338245034586PMID:21511999
five_prime_UTR50333735033477PMID:21511999
three_prime_UTR50338245034586PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF05234 IPR022793 Pfam UAF complex subunit Rrn10 2 97 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.54 Da
Charge -12.00
Isoelectric point 3.90
Molecular weight 11.01 kDa
Number of residues 97
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.7PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.51PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
rrn5RNA polymerase I upstream activation factor complex subunit Rrn5 Co-fractionationPMID:12490702
spp27RNA polymerase I upstream activation factor complex subunit Spp27 Two-hybridPMID:12490702
Co-fractionation
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External References
Database Identifier Description
NBRP SPAC22E12.08 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC22E12.08 Retrieval of eukaryotic orthologs
BioGrid SPAC22E12.08 BioGRID Interaction Datasets
Bähler Lab SPAC22E12.08 Cell Cycle Expression Profile
Bähler Lab SPAC22E12.08 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC22E12.08 Pheromone response/mating expression profiles
Bähler Lab SPAC22E12.08 Environmental stress expression profiles
Bähler Lab SPAC22E12.08 Bähler Lab Transcriptome Viewer
Cyclebase SPAC22E12.08 Cell Cycle Data
PInt SPAC22E12.08 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC22E12.08 Entrez Gene
Uniprot_genenameRRN10
EntrezGene2541835RNA polymerase I upstream activation factor complex subunit Rrn10
WikiGene2541835RNA polymerase I upstream activation factor complex subunit Rrn10
SPD / RIKEN02/02B04Orfeome Localization Data
UniProtKB/SwissProtQ10360RNA polymerase I-specific transcription initiation factor rrn10
ModBaseQ10360Database of comparative protein structure models
Pfam Protein DomainsQ10360Pfam Domain Arrangement
RefSeq PeptideNP_594834RNA polymerase I upstream activation factor complex subunit Rrn10
RefSeq mRNANM_001020263972h- RNA polymerase I upstream activation factor complex subunit Rrn10 (rrn10), mRNA
European Nucleotide ArchiveCAA93895ENA Protein Mapping
UniParcUPI000013A905UniProt Archive

Literature for rrn10
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013