etp1 (SPAC22E12.10c)

Synonymscox15 ChromosomeI
Productmitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion Gene Start5039150
Feature Typeprotein coding Gene End5036954
Name Description CDS Start5039103
Characterisation Statuspublished CDS End5037208

Ensembl Gene Location
rna1 rrn10 krp1 > etp1 < set3 rlp24 SPATRNAARG.03
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
150391505037492
250374465036954

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00111 Pfam 2Fe-2S ferredoxin-type domain 539 590 24.9 1
PF02628 Pfam Heme A synthase 100 457 346.9 1
54292 Superfamily 518 603 79.6 2
TMHMM tmhmm Double transmembrane domain 99 119 0.99717 1312
TMHMM tmhmm Double transmembrane domain 182 201 0.99084 1312
TMHMM tmhmm Double transmembrane domain 213 231 0.9976 1312
TMHMM tmhmm Double transmembrane domain 253 275 0.95481 1312
TMHMM tmhmm Double transmembrane domain 311 331 0.99492 1312
TMHMM tmhmm Double transmembrane domain 381 401 0.99847 1312
TMHMM tmhmm Double transmembrane domain 416 436 0.96784 1312
TMHMM tmhmm Double transmembrane domain 442 443 0.49488 1312
PS00814 scanprosite Adrenodoxin 541 551 1
PR00355 Prints Adrenodoxin 541 551 74.79 1
PR00355 Prints Adrenodoxin 560 574 46.97 1
PR00355 Prints Adrenodoxin 583 591 68.69 1

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073
SO:0000813cleavage siteTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000813

Protein Properties

Ave. residue weight 111.34 Da
Charge 25.00
Isoelectric point 9.92
Molecular weight 68.58 kDa
Number of residues 616
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0006784heme a biosynthetic processIEAGO_REF:0000002Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0006784
GO:0008535respiratory chain complex IV assemblyISS UniProtKB:P40086GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0008535
GO:0022900electron transport chainIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0022900

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005739mitochondrionIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005739
GO:0005739mitochondrionIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005739
GO:0031305integral to mitochondrial inner membraneIC GO:0005743 | GO:0016021GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0031305

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0009055electron carrier activityIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0009055
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:00515372 iron, 2 sulfur cluster bindingISS PFAM:PF00111Temporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0051537
IEAGO_REF:0000002
IEAGO_REF:0000004

Disease Association

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DescriptionSourceAll Genes
mitochondrial cardiomyopathyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002815

Genome Organisation

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DescriptionSourceAll Genes
tandem fusion proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000229
domain combination not observed in other organismsTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000228

Warning

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DescriptionSourceAll Genes
gene structure updated Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source

External References

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Database Identifier Description
NBRP SPAC22E12.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC22E12.10c Retrieval of eukaryotic orthologs
BioGrid SPAC22E12.10c BioGRID Interaction Datasets
Bähler Lab SPAC22E12.10c Cell Cycle Expression Profile
Bähler Lab SPAC22E12.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC22E12.10c Pheromone response/mating expression profiles
Bähler Lab SPAC22E12.10c Environmental stress expression profiles
Bähler Lab SPAC22E12.10c Bähler Lab Transcriptome Viewer
Cyclebase SPAC22E12.10c Cell Cycle Data
Entrez Gene SPAC22E12.10c Link to Entrez Gene
SPD / RIKEN26/26E08Orfeome Localization Data
UniProtKB/SwissProtQ10361Electron transfer protein 1, mitochondrial
ArrayExpressQ10361Link to ArrayExpress
RefSeq PeptideNP_594836mitochondrial type I
RefSeq mRNANM_001020265972h- mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion (etp1), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
ePDB2WLBLink to the European PDB
PDBsum2WLBLink to PDBsum
European Nucleotide ArchiveCAA93897ENA Protein Mapping
UniParcUPI0001B062ADUniProt Archive

Literature for etp1

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Search: UK PMC or PubMed