rtf1 (SPAC22F8.07c)

Synonyms ChromosomeI
Productreplication termination factor Rtf1 Gene Start4799346
Feature Typeprotein coding Gene End4797195
Name Description CDS Start4798928
Characterisation Statuspublished CDS End4797267

Ensembl Gene Location
SPAC22F8.04 SPNCRNA.1024 SPAC22F8.05 pam1 SPATRNAALA.06 > rtf1 < sec24 rrp16 sap145
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
147993464798490
247984424798276
347982304798143
447981034797992
547979534797621
647975754797424
747973764797195

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00249 Pfam SANT/Myb domain 257 299 34.9 12
PF00249 Pfam SANT/Myb domain 307 358 28.6 12
46689 Superfamily 300 375 35.1 24
46689 Superfamily 247 303 41.5 24
SM00717 Smart SANT/Myb domain 255 302 41.3 15
SM00717 Smart SANT/Myb domain 306 361 32.3 15
SM00717 Smart SANT/Myb domain 365 420 0.3 15
PS50090 PROSITE Myb-like domain 302 359 8.095 3
PS51294 PROSITE Myb domain, DNA-binding 251 304 23.415 5

Protein Properties

Ave. residue weight 118.50 Da
Charge 15.00
Isoelectric point 8.68
Molecular weight 55.22 kDa
Number of residues 466
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0071171site-specific DNA replication termination at RTS1 barrierIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0071171

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIC GO:0006369GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0003677DNA bindingIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0003677
GO:0042802identical protein bindingIPI rtf1Temporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0042802
GO:0043110rDNA spacer replication fork barrier bindingIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0043110

Warning

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DescriptionSourceAll Genes
gene structure updatedTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Protein Family

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DescriptionSourceAll Genes
Myb familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0001260

Species Distribution

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DescriptionSourceAll Genes
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
sre2membrane-tethered transcription factor (predicted) Negative Genetic
dsc2UBA domain protein Ucp14 Negative Genetic

Physical Interactions from BioGRID

Gene Feature Evidence Source

External References

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Database Identifier Description
NBRP SPAC22F8.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC22F8.07c Retrieval of eukaryotic orthologs
BioGrid SPAC22F8.07c BioGRID Interaction Datasets
Bähler Lab SPAC22F8.07c Cell Cycle Expression Profile
Bähler Lab SPAC22F8.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC22F8.07c Pheromone response/mating expression profiles
Bähler Lab SPAC22F8.07c Environmental stress expression profiles
Bähler Lab SPAC22F8.07c Bähler Lab Transcriptome Viewer
Cyclebase SPAC22F8.07c Cell Cycle Data
Entrez Gene SPAC22F8.07c Link to Entrez Gene
SPD / RIKEN45/45E04Orfeome Localization Data
UniProtKB/SwissProtQ9UUI6Replication termination factor 1
ArrayExpressQ9UUI6Link to ArrayExpress
RefSeq PeptideNP_594730replication termination factor Rtf1
RefSeq mRNANM_001020158972h- replication termination factor Rtf1 (rtf1), mRNA
European Nucleotide ArchiveAJ627891ENA EMBL mapping
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB52717ENA Protein Mapping
European Nucleotide ArchiveCAF31329ENA Protein Mapping
UniParcUPI000049C14CUniProt Archive

Literature for rtf1

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Search: UK PMC or PubMed