SPAC23H3.04

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC23H3.04 Gene Start2499035
Synonyms Gene End2500236
Productconserved fungal protein Gene Length1202
Feature Typeprotein coding CDS Start2499035
Name Description CDS End2500236
Characterisation Statusconserved_unknown CDS Length1202

Ensembl Gene Location
  1. sec73
  2. ini1
  3. npr2
  4. SPNCRNA.558
  5. SPNCRNA.830
  6. SPAC23H3.04
  7. swd1
  8. apl6
  9. mrp2
  10. bub3
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC23H3.04delta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0000139Golgi membraneIEASL-0134GO_REF:0000039
GO:0005794Golgi apparatusIDAPMID:16823372
GO:0005886plasma membraneNASGO_REF:0000001
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
124990352499159
224991612499353
324994432499824
424998752500236
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
TMhelix TMHMM 174 196 955
TMhelix TMHMM 249 271 955
TMhelix TMHMM 217 239 955
TMhelix TMHMM 278 298 955
TMhelix TMHMM 74 96 955
TMhelix TMHMM 37 59 955
TMhelix TMHMM 318 340 955
TMhelix TMHMM 103 125 955

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 115.25 Da
Charge 11.50
Isoelectric point 8.88
Molecular weight 40.68 kDa
Number of residues 353
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide0.23PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.44PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
frameshifted PMID:16823372
sequence error in genomic data PMID:16823372
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
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External References
Database Identifier Description
NBRP SPAC23H3.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC23H3.04 Retrieval of eukaryotic orthologs
BioGrid SPAC23H3.04 BioGRID Interaction Datasets
Bähler Lab SPAC23H3.04 Cell Cycle Expression Profile
Bähler Lab SPAC23H3.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC23H3.04 Pheromone response/mating expression profiles
Bähler Lab SPAC23H3.04 Environmental stress expression profiles
Bähler Lab SPAC23H3.04 Bähler Lab Transcriptome Viewer
Cyclebase SPAC23H3.04 Cell Cycle Data
PInt SPAC23H3.04 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC23H3.04 Entrez Gene
WikiGene2541775conserved fungal protein
EntrezGene2541775conserved fungal protein
SPD / RIKEN19/19C03Orfeome Localization Data
UniProtKB/SwissProtO13938UPF0658 Golgi apparatus membrane protein C23H3.04
ModBaseO13938Database of comparative protein structure models
Pfam Protein DomainsO13938Pfam Domain Arrangement
RefSeq PeptideNP_593794conserved fungal protein
RefSeq mRNANM_001019223972h- conserved fungal protein (SPAC23H3.04), mRNA
European Nucleotide ArchiveCAB16233ENA Protein Mapping
UniParcUPI0001B0626AUniProt Archive

Literature for SPAC23H3.04
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013