cdb4 (SPAC23H4.09)

Synonyms ChromosomeI
Productcurved DNA-binding protein Cdb4, peptidase family Gene Start1593194
Feature Typeprotein coding Gene End1591873
Name Description CDS Start1593083
Characterisation Statusconserved_unknown CDS End1591938

Ensembl Gene Location
vam6 SPAC23H4.21 SPAC23H4.13c alp13 cnl2 thi4 > cdb4 < iwr1 srp102 gln1 SPAC23H4.05c
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
115931941591873

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00557 Pfam Peptidase M24, structural domain 24 229 88.1 8
46785 Superfamily 238 313 52 43
55920 Superfamily 5 341 165.5 8
TIGR00495 Tigrfam Proliferation-associated protein 1 1 381 961.6 1


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residue
Temporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Protein Properties

Ave. residue weight 109.18 Da
Charge 4.00
Isoelectric point 8.26
Molecular weight 41.60 kDa
Number of residues 381
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0003677DNA bindingIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0003677
GO:0008237metallopeptidase activityISS PFAM:PF00557GO_REF:0000024Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0008237

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in ArchaeaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000130
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPAC23H4.09 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC23H4.09 Retrieval of eukaryotic orthologs
BioGrid SPAC23H4.09 BioGRID Interaction Datasets
Bähler Lab SPAC23H4.09 Cell Cycle Expression Profile
Bähler Lab SPAC23H4.09 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC23H4.09 Pheromone response/mating expression profiles
Bähler Lab SPAC23H4.09 Environmental stress expression profiles
Bähler Lab SPAC23H4.09 Bähler Lab Transcriptome Viewer
Cyclebase SPAC23H4.09 Cell Cycle Data
Entrez Gene SPAC23H4.09 Link to Entrez Gene
SPD / RIKEN18/18B01Orfeome Localization Data
UniProtKB/SwissProtQ09184Curved DNA-binding protein
ArrayExpressQ09184Link to ArrayExpress
RefSeq PeptideNP_593397curved DNA-binding protein Cdb4
RefSeq mRNANM_001018829972h- curved DNA-binding protein Cdb4 (cdb4), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveD14907ENA EMBL mapping
European Nucleotide ArchiveBAA03607ENA Protein Mapping
European Nucleotide ArchiveCAB11663ENA Protein Mapping
UniParcUPI00001273E0UniProt Archive

Literature for cdb4

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Search: UK PMC or PubMed