cfh1 (SPAC24B11.10c)

Gene Standard Namecfh1 ChromosomeI
Systematic IDSPAC24B11.10c Gene Start221562
Synonymschr3 Gene End218260
Productchitin synthase regulatory factor-like Cfh1 (predicted) Gene Length3303
Feature Typeprotein coding CDS Start221455
Name DescriptionChs Four Homologue CDS End218657
Characterisation Statusconserved_unknown CDS Length2799

Ensembl Gene Location
  1. SPAC24B11.08c
  2. SPNCRNA.623
  3. SPNCRNA.142
  4. mpc2
  5. cfh1
  6. sid2
  7. SPAC24B11.12c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopycfh1delta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0032153cell division siteIDAPMID:16823372
GO:0044732mitotic spindle pole bodyIDAPMID:16823372
GO:0051286cell tipIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1221562218260

References

Region Start End Reference
three_prime_UTR218656218260PMID:21511999
three_prime_UTR218656218260PMID:21511999
five_prime_UTR221562221456PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF08238 IPR006597 Pfam Sel1-like 864 898 6
PF08238 IPR006597 Pfam Sel1-like 638 674 6
PF08238 IPR006597 Pfam Sel1-like 677 708 6
PF08238 IPR006597 Pfam Sel1-like 752 771 6
PF08238 IPR006597 Pfam Sel1-like 712 744 6
PF08238 IPR006597 Pfam Sel1-like 789 825 6
PF08238 IPR006597 Pfam Sel1-like 829 862 6
SM00671 IPR006597 SMART Sel1-like 751 788 7
SM00671 IPR006597 SMART Sel1-like 789 825 7
SM00671 IPR006597 SMART Sel1-like 638 674 7
SM00671 IPR006597 SMART Sel1-like 711 747 7
SM00671 IPR006597 SMART Sel1-like 826 863 7
SM00671 IPR006597 SMART Sel1-like 864 899 7
SM00671 IPR006597 SMART Sel1-like 675 710 7
G3DSA:1.25.40.10 IPR011990 Gene3D 637 912 55
SSF81901 SuperFamily 656 903 9
PTHR11102:SF12 hmmpanther 99 908 3
PTHR11102 hmmpanther 99 908 7

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000212SEL1 repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000212

Protein Properties

Ave. residue weight 110.71 Da
Charge 31.00
Isoelectric point 9.54
Molecular weight 103.18 kDa
Number of residues 932
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide3259.74PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide3185.27PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.74PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide2.8PMID:23101633
Warning
DescriptionQualifierReference
gene structure may be incorrect
possible splicing
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
sdh4TIM22 inner membrane protein import complex anchor subunit Tim18 Positive GeneticPMID:22681890
ypa2protein phosphatase type 2A regulator, PTPA family Ypa2 Negative GeneticPMID:22681890
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Negative GeneticPMID:22681890
ppa2serine/threonine protein phosphatase Ppa2 Negative GeneticPMID:22681890
php3CCAAT-binding factor complex subunit Php3 Positive GeneticPMID:22681890
pck1protein kinase C (PKC)-like Pck1 Negative GeneticPMID:22681890
SPAC3G9.05GTPase activating protein (predicted) Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC24B11.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC24B11.10c Retrieval of eukaryotic orthologs
BioGrid SPAC24B11.10c BioGRID Interaction Datasets
Bähler Lab SPAC24B11.10c Cell Cycle Expression Profile
Bähler Lab SPAC24B11.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC24B11.10c Pheromone response/mating expression profiles
Bähler Lab SPAC24B11.10c Environmental stress expression profiles
Bähler Lab SPAC24B11.10c Bähler Lab Transcriptome Viewer
Cyclebase SPAC24B11.10c Cell Cycle Data
PInt SPAC24B11.10c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC24B11.10c Entrez Gene
WikiGene2541607chitin synthase regulatory factor Chr3 (predicted)
Uniprot_genenameCHR3
EntrezGene2541607chitin synthase regulatory factor Chr3 (predicted)
UniProtKB/SwissProtQ09897Chitin synthase regulatory factor 3
ModBaseQ09897Database of comparative protein structure models
Pfam Protein DomainsQ09897Pfam Domain Arrangement
RefSeq PeptideNP_592847chitin synthase regulatory factor Chr3 (predicted)
RefSeq mRNANM_001018248972h- chitin synthase regulatory factor Chr3 (predicted) (chr3), mRNA
European Nucleotide ArchiveCAA91775ENA Protein Mapping
SPD / RIKEN29/29D12Orfeome Localization Data
UniParcUPI000013A0D0UniProt Archive

Literature for cfh1
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013