bgs2 (SPAC24C9.07c)

Gene Standard Namebgs2 ChromosomeI
Systematic IDSPAC24C9.07c Gene Start3059282
Synonymsmeu21, pgs2 Gene End3053214
Product1,3-beta-glucan synthase subunit Bgs2 Gene Length6069
Feature Typeprotein coding CDS Start3059282
Name DescriptionMeiotic Expression Upregulated CDS End3053598
Characterisation Statuspublished CDS Length5685

Ensembl Gene Location
  1. SPAC24C9.06c
  2. SPNCRNA.879
  3. bgs2
  4. SPNCRNA.880
  5. SPNCRNA.881
  6. SPNCRNA.212
  7. SPNCRNA.882
  8. SPAC24C9.08
  9. SPAC24C9.09
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopybgs2delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:00038431,3-beta-D-glucan synthase activityISSbgs1PMID:10922478
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0030476ascospore wall assemblyIMPPMID:10922478
GO:0034411cell wall (1->3)-beta-D-glucan biosynthetic processISSbgs1GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:00001481,3-beta-D-glucan synthase complexICGO:0003843GO_REF:0000001
GO:0005628prospore membraneIDAPMID:11069657
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130592823053214

References

Region Start End Reference
three_prime_UTR30535973053214PMID:21511999
three_prime_UTR30535973053214PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF14288 IPR026899 Pfam 1,3-beta-glucan synthase subunit FKS1-like, domain-1 334 442 4
PF02364 IPR003440 Pfam Glycosyl transferase, family 48 843 1666 4
TMhelix TMHMM 1775 1797 955
TMhelix TMHMM 1674 1696 955
TMhelix TMHMM 1708 1730 955
TMhelix TMHMM 657 679 955
TMhelix TMHMM 602 624 955
TMhelix TMHMM 1835 1857 955
TMhelix TMHMM 1476 1498 955
TMhelix TMHMM 703 725 955
TMhelix TMHMM 1394 1411 955
TMhelix TMHMM 1596 1618 955
TMhelix TMHMM 1339 1361 955
TMhelix TMHMM 1637 1659 955
TMhelix TMHMM 565 587 955
TMhelix TMHMM 732 754 955
TMhelix TMHMM 530 552 955
TMhelix TMHMM 1503 1525 955
PTHR31738:SF0 hmmpanther 1 1894 4
PTHR31738 hmmpanther 1 1894 4

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 115.73 Da
Charge 4.50
Isoelectric point 6.71
Molecular weight 219.18 kDa
Number of residues 1894
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
expressed during sporulation PMID:11069657
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.48PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
res1MBF transcription factor complex subunit Res1 Phenotypic EnhancementPMID:19547744
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External References
Database Identifier Description
NBRP SPAC24C9.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC24C9.07c Retrieval of eukaryotic orthologs
BioGrid SPAC24C9.07c BioGRID Interaction Datasets
Bähler Lab SPAC24C9.07c Cell Cycle Expression Profile
Bähler Lab SPAC24C9.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC24C9.07c Pheromone response/mating expression profiles
Bähler Lab SPAC24C9.07c Environmental stress expression profiles
Bähler Lab SPAC24C9.07c Bähler Lab Transcriptome Viewer
Cyclebase SPAC24C9.07c Cell Cycle Data
PInt SPAC24C9.07c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC24C9.07c Entrez Gene
IntEnz2.4.1.34
WikiGene25415861,3-beta-glucan synthase subunit Bgs2
Uniprot_genenameBGS2
EntrezGene25415861,3-beta-glucan synthase subunit Bgs2
SPD / RIKEN39/39E08Orfeome Localization Data
UniProtKB/SwissProtO139671,3-beta-glucan synthase component bgs2
ModBaseO13967Database of comparative protein structure models
Pfam Protein DomainsO13967Pfam Domain Arrangement
RefSeq PeptideNP_5940321,3-beta-glucan synthase subunit Bgs2
RefSeq mRNANM_001019457972h- 1,3-beta-glucan synthase subunit Bgs2 (bgs2), mRNA
European Nucleotide ArchiveBAB60872ENA Protein Mapping
European Nucleotide ArchiveCAB11264ENA Protein Mapping
UniParcUPI0000126920UniProt Archive

Literature for bgs2
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013