rps901 (SPAC24H6.07)


Gene Standard Namerps901 Characterisation Statuspublished
Systematic IDSPAC24H6.07 Feature Typeprotein coding
Synonymsrps9-1, rps9a Name Description
Product40S ribosomal protein S9 Product Size191aa, 22.16 kDa
Genomic Location Chromosome I, 476128-475354 (775nt); CDS:476113-475493 (621nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding57
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation470
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationrps901Δ3844

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyrps901Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons476128..476099, 476053..475354
Intron476098..476054
mRNA476128..475354
5' UTR476128..476114PMID:21511999
CDS476113..476099, 476053..475493
3' UTR475492..475354PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00163 Pfam IPR001912 Ribosomal protein S4/S9, N-terminal 6 62 3
PF01479 Pfam IPR002942 RNA-binding S4 domain 107 150 7
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 107 181 8
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 105 129 3
PTHR11831:SF10 HMMPANTHER 10 191 1
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 10 191 4
3.10.290.10 Gene3D IPR002942 RNA-binding S4 domain 106 151 5
SSF55174 SuperFamily 10 158 5
TIGR01018 TIGRFAM IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal 3 164 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.03 Da
Charge 18.50
Codon Adaptation Index 0.72
Isoelectric point 11.04
Molecular weight 22.16 kDa
Number of residues 191
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1677
present during mitotic M phase, cellular response to thiabendazoleS179
S179
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S179 PMID:21712547
present during cellular response to thiabendazole IDA S179 PMID:18257517
experimental evidence S179 PMID:24763107
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps901 (SPAC24H6.07)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
80630during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
88441during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
85067during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
85619during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
87315during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
110579.57during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
2963.77during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
72during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
8.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in bacteria1002
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPAC24H6.07 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bynxt3ubiquitin protease cofactor Glp1 (predicted) Affinity Capture-MSPMID:22328580
affinity captured bytpr1RNA polymerase II associated Paf1 complex subunit Tpr1 Affinity Capture-MSPMID:24385927
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
binds activation domain construct withnap2nucleosome assembly protein Nap2 Two-hybridPMID:26771498
External References
Database Identifier Description
NBRP SPAC24H6.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC24H6.07 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC24H6.07 BioGRID Interaction Datasets
Expression Viewer SPAC24H6.07 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC24H6.07 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC24H6.07 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC24H6.07 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC24H6.07 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC24H6.07 Transcriptome Viewer (Bähler Lab)
GEO SPAC24H6.07 GEO profiles
PInt SPAC24H6.07 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC24H6.07 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC24H6.07 Fission yeast phenotypic data & analysis
Cyclebase SPAC24H6.07.1 Cell Cycle Data
SPD / RIKEN07/07A04Orfeome Localization Data
UniProtKB/SwissProtQ0975740S ribosomal protein S9-A
ModBaseQ09757Database of comparative protein structure models
STRINGQ09757Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59294540S ribosomal protein S9
RefSeq mRNANM_001018346972h- 40S ribosomal protein S9 (rps901), mRNA
European Nucleotide ArchiveAB011008ENA EMBL mapping
European Nucleotide ArchiveBAA87233.1ENA Protein Mapping
European Nucleotide ArchiveCAA90851.1ENA Protein Mapping
UniParcUPI0000162017UniProt Archive

Literature for rps901

Search: Europe PMC or PubMed

Release Version: PomBase:30_60 - 12 May 2016