rps901 (SPAC24H6.07)


Gene Standard Namerps901 Characterisation Statuspublished
Systematic IDSPAC24H6.07 Feature Typeprotein coding
Synonymsrps9-1, rps9a Name Description
Product40S ribosomal protein S9 Product Size191aa, 22.16 kDa
Genomic Location Chromosome I, 476128-475354 (775nt); CDS:476113-475493 (621nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding56
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis337
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrps901ΔNullPMID:204732893759
Microscopyrps901ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrps901ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1476128476099
2476053475354

UTRs

Region Coordinates Reference
five_prime_UTR476128..476114PMID:21511999
three_prime_UTR475492..475354PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01479 Pfam IPR002942 RNA-binding S4 domain 107 150 7
PF00163 Pfam IPR001912 Ribosomal protein S4/S9, N-terminal 6 106 3
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 105 129 3
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 107 181 8
PTHR11831:SF3 HMMPANTHER 1 191 2
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 1 191 4
3.10.290.10 Gene3D IPR002942 RNA-binding S4 domain 106 151 5
SSF55174 SuperFamily 10 158 5
TIGR01018 tigrfam IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal 3 164 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.03 Da
Charge 18.50
Isoelectric point 11.04
Molecular weight 22.16 kDa
Number of residues 191
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS179PMID:217125471670
present during mitotic M phase
present during cellular response to thiabendazoleIDAS179PMID:18257517
experimental evidenceS179PMID:24763107
MOD:00696phosphorylated residueNASPMID:182575171922
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
80630during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
88441during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
85067during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
85619during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
87315during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
110579.57during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
2963.77during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
72during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
8.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
nxt3ubiquitin protease cofactor Glp1 (predicted) Affinity Capture-MSPMID:22328580
tpr1RNA polymerase II associated Paf1 complex subunit Tpr1 Affinity Capture-MSPMID:24385927
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
External References
Database Identifier Description
NBRP SPAC24H6.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC24H6.07 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC24H6.07 BioGRID Interaction Datasets
Expression Viewer SPAC24H6.07 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC24H6.07 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC24H6.07 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC24H6.07 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC24H6.07 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC24H6.07 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC24H6.07 Cell Cycle Data
GEO SPAC24H6.07 GEO profiles
PInt SPAC24H6.07 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC24H6.07 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC24H6.07 Fission yeast phenotypic data & analysis
SPD / RIKEN07/07A04Orfeome Localization Data
UniProtKB/SwissProtQ0975740S ribosomal protein S9-A
ModBaseQ09757Database of comparative protein structure models
STRINGQ09757Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59294540S ribosomal protein S9
RefSeq mRNANM_001018346972h- 40S ribosomal protein S9 (rps901), mRNA
European Nucleotide ArchiveAB011008ENA EMBL mapping
European Nucleotide ArchiveBAA87233.1ENA Protein Mapping
European Nucleotide ArchiveCAA90851.1ENA Protein Mapping
UniParcUPI0000162017UniProt Archive

Literature for rps901

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014