rps901 (SPAC24H6.07)


Gene Standard Namerps901 Characterisation Statuspublished
Systematic IDSPAC24H6.07 Feature Typeprotein coding
Synonymsrps9-1, rps9a Name Description
Product40S ribosomal protein S9 Product Size191aa, 22.16 kDa
Genomic Location Chromosome I, 476128-475354 (775nt); CDS:476113-475493 (621nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0019843rRNA bindingIEAUniProtKB-KW:KW-0699GO_REF:000003746
GO:0003735structural constituent of ribosomeISOSGD:S000006002GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO:0042254ribosome biogenesisISOSGD:S000006002GO_REF:0000024327
GO:0006412translationISOSGD:S000006002GO_REF:0000024597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722317
GO:0022627cytosolic small ribosomal subunitISOSGD:S000006002GO_REF:000002463
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrps901ΔNullPECO:0000005, PECO:0000137PMID:236978063755
Microscopyrps901ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphologyMicroscopyrps901ΔNullPECO:0000005, PECO:0000137PMID:236978063078
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1476128476099
2476053475354

UTRs

Region Start End Reference
three_prime_UTR475492475354PMID:21511999
five_prime_UTR476128476114PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00163 Pfam IPR001912 Ribosomal protein S4/S9, N-terminal 6 106 3
PF01479 Pfam IPR002942 RNA-binding S4 domain 107 150 7
SM00363 SMART IPR002942 RNA-binding S4 domain 107 171 8
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 105 129 3
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 107 181 8
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 1 191 4
PTHR11831:SF3 HMMPANTHER 1 191 2
G3DSA:3.10.290.10 Gene3D IPR002942 106 151 5
SSF55174 SuperFamily 10 158 5
Low complexity (SEG) seg 181 191
Low complexity (SEG) seg 165 178
TIGR01018 tigrfam IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal 3 164 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.03 Da
Charge 18.50
Isoelectric point 11.04
Molecular weight 22.16 kDa
Number of residues 191
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00696phosphorylated residuePMID:182575171192
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
2963.77during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
110579.57during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
72during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
8.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3394
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
nxt3ubiquitin protease cofactor Glp1 (predicted) Affinity Capture-MSPMID:22328580
tpr1RNA polymerase II associated Paf1 complex subunit Tpr1 Affinity Capture-MSPMID:24385927
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
External References
Database Identifier Description
NBRP SPAC24H6.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC24H6.07 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC24H6.07 BioGRID Interaction Datasets
Expression Viewer SPAC24H6.07 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC24H6.07 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC24H6.07 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC24H6.07 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC24H6.07 Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC24H6.07 Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC24H6.07 Cell Cycle Data
GEO SPAC24H6.07 GEO profiles
PInt SPAC24H6.07 Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene254262940S ribosomal protein S9
EntrezGene254262940S ribosomal protein S9
SPD / RIKEN07/07A04Orfeome Localization Data
UniProtKB/SwissProtQ0975740S ribosomal protein S9-A
ModBaseQ09757Database of comparative protein structure models
StringQ09757Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59294540S ribosomal protein S9
RefSeq mRNANM_001018346972h- 40S ribosomal protein S9 (rps901), mRNA
European Nucleotide ArchiveBAA24900ENA Protein Mapping
European Nucleotide ArchiveBAA87233ENA Protein Mapping
European Nucleotide ArchiveCAA90851ENA Protein Mapping
UniParcUPI0000162017UniProt Archive

Literature for rps901

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014