rpl1101 (SPAC26A3.07c)


Gene Standard Namerpl1101 Characterisation Statusbiological_role_inferred
Systematic IDSPAC26A3.07c Feature Typeprotein coding
Synonymsrpl11, rpl11-1 Name Description
Product60S ribosomal protein L11 (predicted) Product Size174aa, 19.89 kDa
Genomic Location Chromosome I, 3346937-3346068 (870nt); CDS:3346859-3346335 (525nt)

Ensembl Gene Location
  1. chc1
  2. bud23
  3. rpl1101
  4. smb1
  5. rga2
  6. cnt6
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0019843rRNA bindingIEAUniProtKB-KW:KW-0699GO_REF:000003746
GO:0003735structural constituent of ribosomeISOSGD:S000006306GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO:0042254ribosome biogenesisISOSGD:S000006306GO_REF:0000024327
GO:0006412translationISOSGD:S000006306GO_REF:0000024597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722317
GO:0022627cytosolic small ribosomal subunitISOSGD:S000006306GO_REF:000002463
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002642sensitive to amphotericin BCell growth assayrpl1101ΔNullPECO:0000137, PECO:0000005PMID:2225281769
FYPO:0002640sensitive to clotrimazoleCell growth assayrpl1101ΔNullPECO:0000137, PECO:0000005PMID:22252817105
expressivity FYPO_EXT:0000002
FYPO:0002328sensitive to terbinafineCell growth assayrpl1101ΔNullPECO:0000137, PECO:0000005PMID:22252817101
expressivity FYPO_EXT:0000003
FYPO:0002060viable vegetative cell populationMicroscopyrpl1101ΔNullPECO:0000005, PECO:0000137PMID:236978063755
Microscopyrpl1101ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphologyMicroscopyrpl1101ΔNullPECO:0000005, PECO:0000137PMID:236978063078
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
133469373346068

UTRs

Region Start End Reference
five_prime_UTR33469373346860PMID:21511999
three_prime_UTR33463343346068PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00673 Pfam IPR002132 Ribosomal protein L5 64 144 3
PF00281 Pfam IPR002132 Ribosomal protein L5 7 60 2
PS00358 Prosite Patterns IPR020929 Ribosomal protein L5 37 53 2
PTHR11994:SF2 HMMPANTHER 3 174 2
PTHR11994 HMMPANTHER IPR002132 Ribosomal protein L5 3 174 3
G3DSA:3.30.1440.10 Gene3D IPR022803 3 172 3
SSF55282 SuperFamily IPR022803 7 171 3
PIRSF002161 PIRSF IPR002132 Ribosomal protein L5 1 172 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.32 Da
Charge 16.50
Isoelectric point 10.67
Molecular weight 19.89 kDa
Number of residues 174
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
4.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
35during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3394
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
cdc42Rho family GTPase Cdc42 Phenotypic SuppressionPMID:10628977
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPAC26A3.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC26A3.07c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC26A3.07c BioGRID Interaction Datasets
Expression Viewer SPAC26A3.07c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC26A3.07c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC26A3.07c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC26A3.07c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC26A3.07c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC26A3.07c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC26A3.07c Cell Cycle Data
GEO SPAC26A3.07c GEO profiles
PInt SPAC26A3.07c Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene254159160S ribosomal protein L11
WikiGene253984660S ribosomal protein L11
EntrezGene254159160S ribosomal protein L11
EntrezGene253984660S ribosomal protein L11
SPD / RIKEN05/05C03Orfeome Localization Data
UniProtKB/SwissProtQ1015760S ribosomal protein L11
ModBaseQ10157Database of comparative protein structure models
StringQ10157Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59415060S ribosomal protein L11
RefSeq mRNANM_001019574972h- 60S ribosomal protein L11 (rpl1101), mRNA
European Nucleotide ArchiveAAF13719ENA Protein Mapping
European Nucleotide ArchiveBAA31552ENA Protein Mapping
European Nucleotide ArchiveCAA93230ENA Protein Mapping
European Nucleotide ArchiveCAB52808ENA Protein Mapping
UniParcUPI0000133B8FUniProt Archive

Literature for rpl1101

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014