SPAC26F1.12c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC26F1.12c Gene Start5153823
Synonyms Gene End5155228
Productconserved eukaryotic protein Gene Length1406
Feature Typeprotein coding CDS Start5153932
Name Description CDS End5155093
Characterisation Statusconserved_unknown CDS Length1162

Ensembl Gene Location
  1. aif1
  2. snoR56
  3. lrs1
  4. SPNCRNA.1052
  5. SPNCRNA.1053
  6. SPAC26F1.12c
  7. SPNCRNA.1054
  8. SPAC26F1.11
  9. pyp1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC26F1.12cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmISOSGD:S000003419GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
151538235153949
251539905154942
351549945155228

References

Region Start End Reference
five_prime_UTR51538235153931PMID:21511999
five_prime_UTR51538235153931PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04064 IPR007206 Pfam FAM203 C-terminal 283 340 1
PF04063 IPR007205 Pfam FAM203 N-terminal 93 279 1
G3DSA:1.25.10.10 IPR011989 Gene3D 192 329 83
G3DSA:1.25.10.10 IPR011989 Gene3D 7 127 83
SSF48371 IPR016024 SuperFamily 6 333 130
PTHR32199 hmmpanther 1 356 1
PTHR32199:SF0 hmmpanther 1 356 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.90 Da
Charge -22.00
Isoelectric point 4.49
Molecular weight 41.26 kDa
Number of residues 356
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide3175.09PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide7918.66PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.7PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.4PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC26F1.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC26F1.12c Retrieval of eukaryotic orthologs
BioGrid SPAC26F1.12c BioGRID Interaction Datasets
Bähler Lab SPAC26F1.12c Cell Cycle Expression Profile
Bähler Lab SPAC26F1.12c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC26F1.12c Pheromone response/mating expression profiles
Bähler Lab SPAC26F1.12c Environmental stress expression profiles
Bähler Lab SPAC26F1.12c Bähler Lab Transcriptome Viewer
Cyclebase SPAC26F1.12c Cell Cycle Data
PInt SPAC26F1.12c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC26F1.12c Entrez Gene
WikiGene2542675conserved eukaryotic protein
EntrezGene2542675conserved eukaryotic protein
SPD / RIKEN18/18D03Orfeome Localization Data
UniProtKB/SwissProtQ10498FAM203 family protein C1020.12c
ModBaseQ10498Database of comparative protein structure models
Pfam Protein DomainsQ10498Pfam Domain Arrangement
RefSeq PeptideNP_594883conserved eukaryotic protein
RefSeq mRNANM_001020312972h- conserved eukaryotic protein (SPAC26F1.12c), mRNA
European Nucleotide ArchiveCAA97369ENA Protein Mapping
UniParcUPI000013A989UniProt Archive

Literature for SPAC26F1.12c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013