SPAC26H5.04

Synonyms ChromosomeI
Productvacuolar import and degradation protein Vid28 (predicted) Gene Start4121876
Feature Typeprotein coding Gene End4124737
Name Description CDS Start4122149
Characterisation Statusbiological_role_inferred CDS End4124518

Ensembl Gene Location
SPAC23A1.19c SPAC26H5.02c pcf2 SPNCRNA.959 > SPAC26H5.04 < SPNCRNA.960 SPAC26H5.05 SPNCRNA.961 pot1
Transcript
Contact Curators | Back to Top
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
141218764124737

Protein Feature Information
Contact Curators | Back to Top

Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00514 Pfam Armadillo 484 514 20.5 5
48371 Superfamily 413 786 135.2 119

Protein Properties

Ave. residue weight 114.59 Da
Charge -9.50
Isoelectric point 5.29
Molecular weight 90.41 kDa
Number of residues 789
Sequence
Contact Curators | Back to Top

Fission Yeast Phenotype

 Contact Curators | Back to Top
Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

 Contact Curators | Back to Top
Biological Process
Contact Curators | Back to Top
GO IDTermEvidenceWith/FromSourceAll Genes
GO:0007039vacuolar protein catabolic processISS SGD:S000001279GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0007039
GO:0043161proteasomal ubiquitin-dependent protein catabolic processISS SGD:S000001279GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0043161
GO:0045721negative regulation of gluconeogenesisISS SGD:S000001279GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0045721

Cellular Component
Contact Curators | Back to Top
GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000001279GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005737cytoplasmISS SGD:S000001279GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829
GO:0034657GID complexISS SGD:S000001279GO_REF:0000024Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0034657

Protein Family

 Contact Curators | Back to Top
DescriptionSourceAll Genes
armadillo repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002380

Species Distribution

 Contact Curators | Back to Top
DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

 Contact Curators | Back to Top
SpeciesGeneDescription

Interactions

Contact Curators | Back to Top

Genetic Interactions from BioGRID

Gene Feature Evidence Source
air1zinc knuckle TRAMP complex subunit Air1 Negative Genetic
SPBC4B4.04translation initiation factor eIF2A (predicted) Positive Genetic
pob3FACT complex component Pob3 Negative Genetic
cid12poly(A) polymerase Cid12 Positive Genetic
cpd1tRNA (m1A) methyltransferase complex catalytic subunit Cpd1 Positive Genetic
SPCC162.11curidine kinase/uracil phosphoribosyltransferase (predicted) Positive Genetic
pds5cohesin-associated protein Pds5 Positive Genetic
ask1DASH complex subunit Ask1 Negative Genetic
SPAC1952.02ribosome biogenesis protein (predicted) Negative Genetic
raf1Rik1-associated factor Raf1 Positive Genetic


External References

 Contact Curators | Back to Top
Database Identifier Description
NBRP SPAC26H5.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC26H5.04 Retrieval of eukaryotic orthologs
BioGrid SPAC26H5.04 BioGRID Interaction Datasets
Bähler Lab SPAC26H5.04 Cell Cycle Expression Profile
Bähler Lab SPAC26H5.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC26H5.04 Pheromone response/mating expression profiles
Bähler Lab SPAC26H5.04 Environmental stress expression profiles
Bähler Lab SPAC26H5.04 Bähler Lab Transcriptome Viewer
Cyclebase SPAC26H5.04 Cell Cycle Data
Entrez Gene SPAC26H5.04 Link to Entrez Gene
SPD / RIKEN38/38C12Orfeome Localization Data
UniProtKB/SwissProtO13986Uncharacterized protein C26H5.04
ArrayExpressO13986Link to ArrayExpress
RefSeq PeptideNP_594451vacuolar import and degradation protein Vid28
RefSeq mRNANM_001019880972h- vacuolar import and degradation protein Vid28 (SPAC26H5.04), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB66097ENA Protein Mapping
UniParcUPI0000179EA9UniProt Archive

Literature for SPAC26H5.04

 Contact Curators | Back to Top
Search: UK PMC or PubMed