SPAC26H5.07c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC26H5.07c Gene Start4133498
Synonyms Gene End4131406
Productseven transmembrane receptor protein (predicted) Gene Length2093
Feature Typeprotein coding CDS Start4133463
Name Description CDS End4131566
Characterisation Statusbiological_role_inferred CDS Length1898

Ensembl Gene Location
  1. mga2
  2. SPNCRNA.961
  3. pot1
  4. SPAC26H5.07c
  5. bgl2
  6. SPNCRNA.962
  7. SPNCRNA.306
  8. SPAC26H5.09c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC26H5.07cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004872receptor activityISMPFAM:PF06814GO_REF:0000001
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0007166cell surface receptor signaling pathwayISMPFAM:PF06814GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmIDAPMID:16823372
GO:0005887integral to plasma membraneISMPFAM:PF06814GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
141334984133377
241332994133227
341329234131406

References

Region Start End Reference
three_prime_UTR41315654131406PMID:21511999
three_prime_UTR41315654131406PMID:21511999
five_prime_UTR41334984133464PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF06814 IPR009637 Pfam Transmembrane receptor, eukaryota 140 431 2
TMhelix TMHMM 264 286 955
TMhelix TMHMM 363 385 955
TMhelix TMHMM 400 422 955
TMhelix TMHMM 291 310 955
TMhelix TMHMM 181 203 955
TMhelix TMHMM 215 237 955
TMhelix TMHMM 2 20 955
TMhelix TMHMM 320 342 955
PTHR21229 IPR009637 hmmpanther Transmembrane receptor, eukaryota 55 482 2
PTHR21229:SF1 hmmpanther 55 482 2
SignalP-noTM signalp 1 22 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 112.59 Da
Charge -6.50
Isoelectric point 5.39
Molecular weight 56.86 kDa
Number of residues 505
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide7522.98PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3015.52PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide6.9PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.3PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
dsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
pst2Clr6 histone deacetylase complex subunit Pst2 Negative GeneticPMID:22681890
ers1RNA-silencing factor Ers1 Negative GeneticPMID:22681890
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:22681890
Negative GeneticPMID:21504829
ymr1phosphatidylinositol-3-phosphatase, myotubularin family (predicted) Negative GeneticPMID:22681890
dsc5UBX domain containing protein required for Sre1 cleavage Negative GeneticPMID:22681890
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC26H5.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC26H5.07c Retrieval of eukaryotic orthologs
BioGrid SPAC26H5.07c BioGRID Interaction Datasets
Bähler Lab SPAC26H5.07c Cell Cycle Expression Profile
Bähler Lab SPAC26H5.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC26H5.07c Pheromone response/mating expression profiles
Bähler Lab SPAC26H5.07c Environmental stress expression profiles
Bähler Lab SPAC26H5.07c Bähler Lab Transcriptome Viewer
Cyclebase SPAC26H5.07c Cell Cycle Data
PInt SPAC26H5.07c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC26H5.07c Entrez Gene
WikiGene2542691seven transmembrane receptor-like protein
EntrezGene2542691seven transmembrane receptor-like protein
SPD / RIKEN26/26E10Orfeome Localization Data
UniProtKB/SwissProtO13989Uncharacterized protein C26H5.07c
ModBaseO13989Database of comparative protein structure models
Pfam Protein DomainsO13989Pfam Domain Arrangement
RefSeq PeptideNP_594454seven transmembrane receptor-like protein
RefSeq mRNANM_001019883972h- seven transmembrane receptor-like protein (SPAC26H5.07c), mRNA
European Nucleotide ArchiveBAA87278ENA Protein Mapping
European Nucleotide ArchiveCAB16193ENA Protein Mapping
UniParcUPI000006A353UniProt Archive

Literature for SPAC26H5.07c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013