Gene Standard NameUnassigned Characterisation Statusbiological role inferred
Systematic IDSPAC29A4.03c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit Mrps9 (predicted) Product Size271aa, 31.06 kDa
Genomic Location Chromosome I, 5142407-5143810 (1404nt); CDS:5142407-5143224 (818nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
mitochondrial translation152
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial small ribosomal subunit32
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Single-allele Phenotypes

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationSPAC29A4.03cΔ1443

Cell Phenotype

Term NameGenotypesCount
inviable tapered vegetative cellSPAC29A4.03cΔ134
inviable vegetative cell with normal cell morphologySPAC29A4.03cΔ58
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons5142407..5142628, 5142631..5143810
CDS5142407..5142628, 5142631..5143224
3' UTR5143225..5143810PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00380 Pfam IPR000754 Ribosomal protein S9 151 271 3
PS00360 Prosite Patterns IPR020574 Ribosomal protein S9, conserved site 210 228 3
PTHR21569:SF1 HMMPANTHER 21 271 1
PTHR21569 HMMPANTHER IPR000754 Ribosomal protein S9 21 271 3 Gene3D IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup 147 271 20
SSF54211 SuperFamily IPR020568 Ribosomal protein S5 domain 2-type fold 146 271 29

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.62 Da
Charge 32.00
Codon Adpatation Index 0.37
Isoelectric point 10.70
Molecular weight 31.06 kDa
Number of residues 271
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
9984during GO:0000080PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
11632during GO:0000084PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
8333during GO:0000085PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
8565during GO:0000087PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
1120.66during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
10476during GO:0072690PECO:0000005,
single cellmass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.2during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
0.32during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
gene structure updated PMID:21270388433
sequence error in genomic data17
Taxonomic Conservation
predominantly single copy (one to one)3090
conserved in fungi4604
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3421
conserved in vertebrates3396

Manually curated orthologous groups


Orthologs in Compara

External References
Database Identifier Description
NBRP SPAC29A4.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC29A4.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC29A4.03c BioGRID Interaction Datasets
Expression Viewer SPAC29A4.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC29A4.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC29A4.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC29A4.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC29A4.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC29A4.03c Transcriptome Viewer (Bähler Lab)
GEO SPAC29A4.03c GEO profiles
PInt SPAC29A4.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC29A4.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC29A4.03c Fission yeast phenotypic data & analysis
Cyclebase SPAC29A4.03c.1 Cell Cycle Data
SPD / RIKEN03/03A08Orfeome Localization Data
UniProtKB/SwissProtO1400637S ribosomal protein S9, mitochondrial
ModBaseO14006Database of comparative protein structure models
STRINGO14006Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594879mitochondrial ribosomal protein subunit Mrps9 (predicted)
RefSeq mRNANM_001020308972h- mitochondrial ribosomal protein subunit Mrps9 (predicted) (SPAC29A4.03c), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB10130ENA Protein Mapping
European Nucleotide ArchiveCAB10130.2ENA Protein Mapping
UniParcUPI000228F48DUniProt Archive

Literature for SPAC29A4.03c

Search: Europe PMC or PubMed

Release Version: PomBase:28_55 - 09 Sep 2015