SPAC29A4.03c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPAC29A4.03c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit Mrps9 (predicted) Product Size271aa, 31.06 kDa
Genomic Location Chromosome I, 5142407-5143810 (1404nt); CDS:5142407-5143224 (818nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISSUniProtKB:P38120GO_REF:0000001255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0032543mitochondrial translationNASGO_REF:0000051143
GO:0006412translationISSUniProtKB:P38120GO_REF:0000001597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005763mitochondrial small ribosomal subunitISSUniProtKB:P38120GO_REF:000000132
GO:0005739mitochondrionIDAPMID:16823372756
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopySPAC29A4.03cΔNullPECO:0000005, PECO:0000137PMID:236978061309
MicroscopySPAC29A4.03cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002111inviable bottle-shaped vegetative cellMicroscopySPAC29A4.03cΔNullPECO:0000005, PECO:0000137PMID:23697806134
FYPO:0002199inviable vegetative cell with normal cell morphologyMicroscopySPAC29A4.03cΔNullPECO:0000005, PECO:0000137PMID:2369780640
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
151424075142628
251426315143810

UTRs

Region Start End Reference
three_prime_UTR51432255143810PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00380 Pfam IPR000754 Ribosomal protein S9 151 271 3
PS00360 Prosite Patterns IPR020574 Ribosomal protein S9 210 228 3
PTHR21569 HMMPANTHER IPR000754 Ribosomal protein S9 28 271 3
G3DSA:3.30.230.10 Gene3D IPR014721 147 271 19
SSF54211 SuperFamily IPR020568 146 271 29

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.62 Da
Charge 32.00
Isoelectric point 10.70
Molecular weight 31.06 kDa
Number of residues 271
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
1120.66during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.32during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
2.2during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21270388426
frameshifted22
sequence error in genomic data17
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3080
conserved in fungi4564
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3394
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPAC29A4.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC29A4.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC29A4.03c BioGRID Interaction Datasets
Expression Viewer SPAC29A4.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC29A4.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC29A4.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC29A4.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC29A4.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC29A4.03c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC29A4.03c Cell Cycle Data
GEO SPAC29A4.03c GEO profiles
PInt SPAC29A4.03c Protein-Protein Interaction Predictor (Bähler Lab)
WikiGene2542620mitochondrial ribosomal protein subunit S9
EntrezGene2542620mitochondrial ribosomal protein subunit S9
SPD / RIKEN03/03A08Orfeome Localization Data
UniProtKB/SwissProtO1400637S ribosomal protein S9, mitochondrial
ModBaseO14006Database of comparative protein structure models
StringO14006Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594879mitochondrial ribosomal protein subunit S9
RefSeq mRNANM_001020308972h- mitochondrial ribosomal protein subunit S9 (SPAC29A4.03c), mRNA
European Nucleotide ArchiveCAB10130ENA Protein Mapping
UniParcUPI000228F48DUniProt Archive

Literature for SPAC29A4.03c

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014