SPAC29A4.03c


Gene Standard NameUnassigned Characterisation Statusbiological role inferred
Systematic IDSPAC29A4.03c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit Mrps9 (predicted) Product Size271aa, 31.06 kDa
Genomic Location Chromosome I, 5142407-5143810 (1404nt); CDS:5142407-5143224 (818nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
mitochondrial translation148
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial small ribosomal subunit32
Annotation ExtensionEvidenceWith/FromReference
mitochondrion752
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationSPAC29A4.03cΔ1453

Cell Phenotype

Term NameGenotypesCount
inviable tapered vegetative cellSPAC29A4.03cΔ135
inviable vegetative cell with normal cell morphologySPAC29A4.03cΔ58
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons5142407..5142628, 5142631..5143810
Intron5142629..5142630
3' UTR5143225..5143810PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00380 Pfam IPR000754 Ribosomal protein S9 151 271 3
PS00360 Prosite Patterns IPR020574 Ribosomal protein S9, conserved site 210 228 3
PTHR21569:SF1 HMMPANTHER 30 271 1
PTHR21569 HMMPANTHER IPR000754 Ribosomal protein S9 30 271 3
3.30.230.10 Gene3D IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup 147 271 20
SSF54211 SuperFamily IPR020568 Ribosomal protein S5 domain 2-type fold 146 271 29

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.62 Da
Charge 32.00
Codon Adaptation Index 0.37
Isoelectric point 10.70
Molecular weight 31.06 kDa
Number of residues 271
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPAC29A4.03c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
9984during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
11632during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
8333during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
8565during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
10476during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
1120.66during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.2during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.32during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21270388433
frameshifted23
sequence error in genomic data17
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4605
conserved in eukaryotes4515
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPAC29A4.03c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
binds activation domain construct withnap2nucleosome assembly protein Nap2 Two-hybridPMID:26771498
External References
Database Identifier Description
NBRP SPAC29A4.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC29A4.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC29A4.03c BioGRID Interaction Datasets
Expression Viewer SPAC29A4.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC29A4.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC29A4.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC29A4.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC29A4.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC29A4.03c Transcriptome Viewer (Bähler Lab)
GEO SPAC29A4.03c GEO profiles
PInt SPAC29A4.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC29A4.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC29A4.03c Fission yeast phenotypic data & analysis
Cyclebase SPAC29A4.03c.1 Cell Cycle Data
SPD / RIKEN03/03A08Orfeome Localization Data
UniProtKB/SwissProtO1400637S ribosomal protein S9, mitochondrial
ModBaseO14006Database of comparative protein structure models
STRINGO14006Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594879mitochondrial ribosomal protein subunit Mrps9 (predicted)
RefSeq mRNANM_001020308972h- mitochondrial ribosomal protein subunit Mrps9 (predicted) (SPAC29A4.03c), mRNA

Literature for SPAC29A4.03c

Search: Europe PMC or PubMed

Release Version: PomBase:30_58 - 11 Mar 2016