SPAC29A4.06c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC29A4.06c Gene Start5136040
Synonyms Gene End5137368
Productsplicing protein, human NSRP1 ortholog Gene Length1329
Feature Typeprotein coding CDS Start5136167
Name Description CDS End5137276
Characterisation Statusbiological_role_inferred CDS Length1110

Ensembl Gene Location
  1. SPNCRNA.1049
  2. rrn5
  3. SPAC29A4.09
  4. prp19
  5. srb6
  6. SPAC29A4.06c
  7. SPNCRNA.1050
  8. cam2
  9. SPNCRNA.1051
  10. cbf5
  11. SPAC29A4.03c
  12. SPAC29A4.02c
  13. snoR38
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC29A4.06cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003729mRNA bindingISSUniProtKB:Q9H0G5GO_REF:0000001
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0000398mRNA splicing, via spliceosomeISSUniProtKB:Q9H0G5GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0030529ribonucleoprotein complexISSUniProtKB:Q9H0G5GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
151360405136362
251364055137368

References

Region Start End Reference
three_prime_UTR51372775137368PMID:21511999
three_prime_UTR51372775137368PMID:21511999
five_prime_UTR51360405136166PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF09745 IPR018612 Pfam Domain of unknown function DUF2040 51 173 1
Coil ncoils Rabaptin coiled-coil domain 294 315 974
Coil ncoils Rabaptin coiled-coil domain 141 162 974

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0001080coiled_coil

Protein Properties

Ave. residue weight 115.52 Da
Charge 13.50
Isoelectric point 9.89
Molecular weight 41.01 kDa
Number of residues 355
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide362.35PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.5PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.43PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC29A4.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC29A4.06c Retrieval of eukaryotic orthologs
BioGrid SPAC29A4.06c BioGRID Interaction Datasets
Bähler Lab SPAC29A4.06c Cell Cycle Expression Profile
Bähler Lab SPAC29A4.06c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC29A4.06c Pheromone response/mating expression profiles
Bähler Lab SPAC29A4.06c Environmental stress expression profiles
Bähler Lab SPAC29A4.06c Bähler Lab Transcriptome Viewer
Cyclebase SPAC29A4.06c Cell Cycle Data
PInt SPAC29A4.06c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC29A4.06c Entrez Gene
WikiGene2542169hypothetical protein
EntrezGene2542169hypothetical protein
SPD / RIKEN17/17E01Orfeome Localization Data
UniProtKB/SwissProtO14009Nuclear speckle splicing regulatory protein 1 homolog
ModBaseO14009Database of comparative protein structure models
Pfam Protein DomainsO14009Pfam Domain Arrangement
RefSeq PeptideNP_594876hypothetical protein SPAC29A4.06c
RefSeq mRNANM_001020305972h- hypothetical protein (SPAC29A4.06c), mRNA
European Nucleotide ArchiveCAB10133ENA Protein Mapping
UniParcUPI000013AA0FUniProt Archive

Literature for SPAC29A4.06c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013