SPAC29B12.14c


Gene Standard NameUnassigned Characterisation Statusbiological role inferred
Systematic IDSPAC29B12.14c Feature Typeprotein coding
Synonyms Name Description
Productpurine transmembrane transporter (predicted) Product Size590aa, 65.23 kDa
Genomic Location Chromosome I, 5442552-5439647 (2906nt); CDS:5441621-5439849 (1773nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
uracil:cation symporter activity2
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
uracil transmembrane transport2
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
integral component of membrane962
Annotation ExtensionEvidenceWith/FromReference
nucleus2691
Annotation ExtensionEvidenceWith/FromReference
plasma membrane253
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
sensitive to hydroxyureaSPAC29B12.14cΔ580
sensitive to methyl methanesulfonateSPAC29B12.14cΔ321
sensitive to thiabendazoleSPAC29B12.14cΔ327
viable vegetative cell populationSPAC29B12.14cΔ3844

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPAC29B12.14cΔ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons5442552..5439647
mRNA5442552..5439647
5' UTR5442552..5441622PMID:21511999
CDS5441621..5439849
3' UTR5439848..5439647PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF02133 Pfam IPR001248 Purine-cytosine permease 55 506 3
TMhelix TMHMM 466 488 953
TMhelix TMHMM 351 373 953
TMhelix TMHMM 388 410 953
TMhelix TMHMM 194 213 953
TMhelix TMHMM 257 279 953
TMhelix TMHMM 223 245 953
TMhelix TMHMM 294 316 953
TMhelix TMHMM 93 115 953
TMhelix TMHMM 501 523 953
TMhelix TMHMM 135 157 953
TMhelix TMHMM 417 439 953
PTHR30618:SF2 HMMPANTHER 3 586 2
PTHR30618 HMMPANTHER 3 586 3
TIGR00800 TIGRFAM IPR012681 Nucleobase cation symporter-1, NCS1 50 491 2

View domain organization at Pfam

Term IDTerm NameReferenceCount
SO:0001812transmembrane_helix465

Protein Properties

Ave. residue weight 110.56 Da
Charge 8.00
Codon Adaptation Index 0.51
Isoelectric point 8.09
Molecular weight 65.23 kDa
Number of residues 590
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1677
present during mitotic M phaseS567
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S567 PMID:21712547
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased during GO:0034599expression microarray evidencePMID:12529438

Quantitative Gene Expression

View graphical display of gene expression data for SPAC29B12.14c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1606.16during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.3during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.84during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999435
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4606
conserved in eukaryotes4516
conserved in bacteria1002
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPAC29B12.14c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
positive genetic interaction withxap5xap-5-like protein Positive GeneticPMID:24957674
External References
Database Identifier Description
NBRP SPAC29B12.14c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC29B12.14c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC29B12.14c BioGRID Interaction Datasets
Expression Viewer SPAC29B12.14c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC29B12.14c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC29B12.14c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC29B12.14c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC29B12.14c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC29B12.14c Transcriptome Viewer (Bähler Lab)
GEO SPAC29B12.14c GEO profiles
PInt SPAC29B12.14c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC29B12.14c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC29B12.14c Fission yeast phenotypic data & analysis
Cyclebase SPAC29B12.14c.1 Cell Cycle Data
SPD / RIKEN45/45G04Orfeome Localization Data
UniProtKB/SwissProtO14035Uncharacterized permease C29B12.14c
ModBaseO14035Database of comparative protein structure models
STRINGO14035Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_594991purine transporter (predicted)
RefSeq mRNANM_001020422972h- purine transporter (predicted) (SPAC29B12.14c), mRNA
European Nucleotide ArchiveCAB16258.2ENA Protein Mapping
UniParcUPI000228F45AUniProt Archive

Literature for SPAC29B12.14c

Search: Europe PMC or PubMed

Release Version: PomBase:30_60 - 12 May 2016