SPAC2C4.04c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC2C4.04c Gene Start4266618
Synonyms Gene End4265505
Productconserved eukaryotic protein Gene Length1114
Feature Typeprotein coding CDS Start4266099
Name Description CDS End4265722
Characterisation Statusconserved_unknown CDS Length378

Ensembl Gene Location
  1. tif224
  2. prl13
  3. SPAC21E11.07
  4. lcb2
  5. smd2
  6. SPATRNASER.03
  7. SPATRNAMET.03
  8. SPAC2C4.04c
  9. SPAC2C4.05
  10. srp7
  11. SPAC2C4.06c
  12. dis32
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPAC2C4.04cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
142666184265505

References

Region Start End Reference
three_prime_UTR42657214265505PMID:21511999
five_prime_UTR42666184266100PMID:21511999
three_prime_UTR42657214265505PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF10209 IPR018794 Pfam Uncharacterised protein family UPF0538 6 124 1
PTHR18444:SF4 hmmpanther 1 124 1
PTHR18444 IPR018794 hmmpanther Uncharacterised protein family UPF0538 1 124 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.41 Da
Charge 1.00
Isoelectric point 6.96
Molecular weight 14.55 kDa
Number of residues 125
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide8874.81PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide9172.39PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC2C4.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC2C4.04c Retrieval of eukaryotic orthologs
BioGrid SPAC2C4.04c BioGRID Interaction Datasets
Bähler Lab SPAC2C4.04c Cell Cycle Expression Profile
Bähler Lab SPAC2C4.04c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC2C4.04c Pheromone response/mating expression profiles
Bähler Lab SPAC2C4.04c Environmental stress expression profiles
Bähler Lab SPAC2C4.04c Bähler Lab Transcriptome Viewer
Cyclebase SPAC2C4.04c Cell Cycle Data
PInt SPAC2C4.04c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC2C4.04c Entrez Gene
WikiGene2542455conserved eukaryotic protein
EntrezGene2542455conserved eukaryotic protein
SPD / RIKEN02/02G03Orfeome Localization Data
UniProtKB/SwissProtO14037UPF0538 protein C2C4.04c
ModBaseO14037Database of comparative protein structure models
Pfam Protein DomainsO14037Pfam Domain Arrangement
RefSeq PeptideNP_594507conserved eukaryotic protein
RefSeq mRNANM_001019936972h- conserved eukaryotic protein (SPAC2C4.04c), mRNA
European Nucleotide ArchiveCAB16364ENA Protein Mapping
UniParcUPI0000069BDBUniProt Archive

Literature for SPAC2C4.04c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013