SPAC2C4.05

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC2C4.05 Gene Start4267059
Synonyms Gene End4268079
Productcornichon family protein (predicted) Gene Length1021
Feature Typeprotein coding CDS Start4267113
Name Description CDS End4267604
Characterisation Statusbiological_role_inferred CDS Length492

Ensembl Gene Location
  1. SPAC21E11.07
  2. lcb2
  3. smd2
  4. SPATRNASER.03
  5. SPATRNAMET.03
  6. SPAC2C4.04c
  7. SPAC2C4.05
  8. srp7
  9. SPAC2C4.06c
  10. dis32
  11. SPAC2C4.08
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC2C4.05delta (deletion)deletionPMID:20473289
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006886intracellular protein transportICGO:0006888GO_REF:0000001
GO:0006888ER to Golgi vesicle-mediated transportISOSGD:S000000414GO_REF:0000024
GO:0035556intracellular signal transductionIEAIPR003377GO_REF:0000002
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0005789endoplasmic reticulum membraneISOSGD:S000000414GO_REF:0000024
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
GO:0030134ER to Golgi transport vesicleISOSGD:S000000414GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
142670594267233
242673214268079

References

Region Start End Reference
three_prime_UTR42676054268079PMID:21511999
five_prime_UTR42670594267112PMID:21511999
three_prime_UTR42676054268079PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03311 IPR003377 Pfam Cornichon 3 125 2
TMhelix TMHMM 5 27 955
TMhelix TMHMM 54 76 955
TMhelix TMHMM 110 132 955
PS01340 IPR003377 Prosite Patterns Cornichon 26 40 2
PTHR12290 hmmpanther 1 134 3
PTHR12290:SF4 hmmpanther 1 134 2

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 117.45 Da
Charge 2.00
Isoelectric point 8.21
Molecular weight 15.74 kDa
Number of residues 134
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide14571.18PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide39104.58PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.4PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide9.4PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPAC2C4.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC2C4.05 Retrieval of eukaryotic orthologs
BioGrid SPAC2C4.05 BioGRID Interaction Datasets
Bähler Lab SPAC2C4.05 Cell Cycle Expression Profile
Bähler Lab SPAC2C4.05 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC2C4.05 Pheromone response/mating expression profiles
Bähler Lab SPAC2C4.05 Environmental stress expression profiles
Bähler Lab SPAC2C4.05 Bähler Lab Transcriptome Viewer
Cyclebase SPAC2C4.05 Cell Cycle Data
PInt SPAC2C4.05 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC2C4.05 Entrez Gene
WikiGene2542639cornichon family protein
EntrezGene2542639cornichon family protein
SPD / RIKEN04/04F12Orfeome Localization Data
UniProtKB/SwissProtO14038Uncharacterized protein C2C4.05
ModBaseO14038Database of comparative protein structure models
Pfam Protein DomainsO14038Pfam Domain Arrangement
RefSeq PeptideNP_594508cornichon family protein
RefSeq mRNANM_001019937972h- cornichon family protein (SPAC2C4.05), mRNA
European Nucleotide ArchiveBAA87145ENA Protein Mapping
European Nucleotide ArchiveCAB16365ENA Protein Mapping
UniParcUPI000013ACCCUniProt Archive

Literature for SPAC2C4.05
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013