Tf2-3 (SPAC2E1P3.03c)

Gene Standard NameTf2-3 ChromosomeI
Systematic IDSPAC2E1P3.03c Gene Start2931500
Synonyms Gene End2927204
Productretrotransposable element/transposon Tf2-type Gene Length4297
Feature Typeprotein coding CDS Start2931205
Name Description CDS End2927204
Characterisation Statustransposon CDS Length4002

Ensembl Gene Location
  1. SPAC513.07
  2. SPAC2E1P3.01
  3. amt3
  4. SPNCRNA.859
  5. Tf2-3
  6. SPNCRNA.860
  7. cao1
  8. SPNCRNA.528
  9. SPAC2E1P3.05c
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0003964RNA-directed DNA polymerase activityNASGO_REF:0000051
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
129315002927204

References

Region Start End Reference
five_prime_UTR29315002931206PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00665 IPR001584 Pfam Integrase, catalytic core 981 1094 13
PF00078 IPR000477 Pfam Reverse transcriptase 455 615 15
PF12382 IPR024648 Pfam Peptidase A2E, retrotransposon 219 355 13
PS50994 IPR001584 Prosite Profiles Integrase, catalytic core 979 1138 13
PS50878 IPR000477 Prosite Profiles Reverse transcriptase 436 615 15
PS00141 IPR001969 Prosite Patterns Peptidase aspartic, active site 268 279 14
G3DSA:3.30.70.270 Gene3D 536 617 16
G3DSA:3.30.420.10 Gene3D 979 1131 31
G3DSA:3.10.10.10 Gene3D 404 535 13
SSF50630 IPR021109 SuperFamily 266 332 15
SSF53098 IPR012337 SuperFamily 976 1135 34
SSF56672 SuperFamily 377 818 24
Coil ncoils Rabaptin coiled-coil domain 582 603 974
PTHR10178 hmmpanther 6 1267 13
PTHR10178:SF14 hmmpanther 6 1267 13

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000992Tf2-type transposonTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000992

Protein Properties

Ave. residue weight 116.22 Da
Charge 54.50
Isoelectric point 9.57
Molecular weight 154.92 kDa
Number of residues 1333
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.51PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
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External References
Database Identifier Description
NBRP SPAC2E1P3.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC2E1P3.03c Retrieval of eukaryotic orthologs
BioGrid SPAC2E1P3.03c BioGRID Interaction Datasets
Bähler Lab SPAC2E1P3.03c Cell Cycle Expression Profile
Bähler Lab SPAC2E1P3.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC2E1P3.03c Pheromone response/mating expression profiles
Bähler Lab SPAC2E1P3.03c Environmental stress expression profiles
Bähler Lab SPAC2E1P3.03c Bähler Lab Transcriptome Viewer
Cyclebase SPAC2E1P3.03c Cell Cycle Data
PInt SPAC2E1P3.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC2E1P3.03c Entrez Gene
WikiGene3361422retrotransposable element
WikiGene2541991retrotransposable element
WikiGene2541833retrotransposable element
WikiGene2538755retrotransposable element
Uniprot_genenameSPAC1F2.03
EntrezGene3361422retrotransposable element
EntrezGene2541991retrotransposable element
EntrezGene2541833retrotransposable element
EntrezGene2538755retrotransposable element
RefSeq PeptideNP_001018276retrotransposable element
RefSeq PeptideNP_587955retrotransposable element
RefSeq PeptideNP_593984retrotransposable element
RefSeq PeptideNP_594409retrotransposable element
RefSeq mRNANM_001019410972h- retrotransposable element (Tf2-3), mRNA
RefSeq mRNANM_001019831972h- retrotransposable element (Tf2-5), mRNA
RefSeq mRNANM_001019840972h- retrotransposable element (Tf2-6), mRNA
RefSeq mRNANM_001022946972h- retrotransposable element (Tf2-12), mRNA
Uniprot/SPTREMBLQ9UTF1Tf2 type transposon
European Nucleotide ArchiveCAB59613ENA Protein Mapping

Literature for Tf2-3
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013