SPAC2F7.09c

Gene Standard NameUnassigned ChromosomeI
Systematic IDSPAC2F7.09c Gene Start550726
Synonyms Gene End548768
Productmitochondrial GTPase related protein (prediected) Gene Length1959
Feature Typeprotein coding CDS Start550243
Name Description CDS End548768
Characterisation Statusconserved_unknown CDS Length1476

Ensembl Gene Location
  1. pol4
  2. SPNCRNA.552
  3. SPNCRNA.660
  4. cph2
  5. snf5
  6. SPNCRNA.661
  7. SPAC2F7.09c
  8. akr1
  9. nrd1
  10. SPNCRNA.154
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPAC2F7.09cdelta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005525GTP bindingIEAIPR006073GO_REF:0000002
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmIDAPMID:16823372
GO:0005739mitochondrionISOSGD:S000005731GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1550726548768

References

Region Start End Reference
five_prime_UTR550726550244PMID:20118936
five_prime_UTR550726550244PMID:20118936
five_prime_UTR550726550244PMID:18641648
five_prime_UTR550726550244PMID:18641648
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01926 IPR006073 Pfam GTP binding domain 212 280 12
G3DSA:3.40.50.300 Gene3D 131 280 279
SSF52540 SuperFamily 130 282 294

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.12 Da
Charge 33.50
Isoelectric point 10.35
Molecular weight 55.05 kDa
Number of residues 491
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.29PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
SPBC660.05WW domain containing conserved fungal protein Negative GeneticPMID:22681890
sif1Sad1 interacting factor 1 Positive GeneticPMID:22681890
set1histone lysine methyltransferase Set1 Positive GeneticPMID:22681890
vps35retromer complex subunit Vps35 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPAC2F7.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC2F7.09c Retrieval of eukaryotic orthologs
BioGrid SPAC2F7.09c BioGRID Interaction Datasets
Bähler Lab SPAC2F7.09c Cell Cycle Expression Profile
Bähler Lab SPAC2F7.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC2F7.09c Pheromone response/mating expression profiles
Bähler Lab SPAC2F7.09c Environmental stress expression profiles
Bähler Lab SPAC2F7.09c Bähler Lab Transcriptome Viewer
Cyclebase SPAC2F7.09c Cell Cycle Data
PInt SPAC2F7.09c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC2F7.09c Entrez Gene
SPD / RIKEN23/23G10Orfeome Localization Data
WikiGene2541882hypothetical protein
EntrezGene2541882hypothetical protein
UniProtKB/SwissProtQ09700Uncharacterized protein C2F7.09c
ModBaseQ09700Database of comparative protein structure models
Pfam Protein DomainsQ09700Pfam Domain Arrangement
RefSeq PeptideNP_592980hypothetical protein SPAC2F7.09c
RefSeq mRNANM_001018380972h- hypothetical protein (SPAC2F7.09c), mRNA
European Nucleotide ArchiveCAA90496ENA Protein Mapping
UniParcUPI0000139F2CUniProt Archive

Literature for SPAC2F7.09c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013