urb2 (SPAC2G11.02)

Gene Standard Nameurb2 ChromosomeI
Systematic IDSPAC2G11.02 Gene Start807894
Synonyms Gene End812194
Productribosome biogenesis protein Urb2 (predicted) Gene Length4301
Feature Typeprotein coding CDS Start808028
Name Description CDS End812042
Characterisation Statusbiological_role_inferred CDS Length4015

Ensembl Gene Location
  1. upf1
  2. pom2
  3. urb2
  4. vps45
  5. SPAC2G11.04
  6. rim20
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopyurb2delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0006364rRNA processingIEAUniProtKB:KW-0698GO_REF:0000037
GO:0042254ribosome biogenesisISSUniProtKB:P47108GO_REF:0000001
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005730nucleolusISSUniProtKB:P47108GO_REF:0000001
GO:0005829cytosolIDAPMID:16823372
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1807894808197
2808256812194

References

Region Start End Reference
three_prime_UTR812043812194PMID:21511999
three_prime_UTR812043812194PMID:21511999
five_prime_UTR807894808027PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF10441 IPR018849 Pfam Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal 1089 1317 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.00 Da
Charge 15.00
Isoelectric point 7.24
Molecular weight 151.57 kDa
Number of residues 1318
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1677.71PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1679.59PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.27PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.4PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
External References
Database Identifier Description
NBRP SPAC2G11.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC2G11.02 Retrieval of eukaryotic orthologs
BioGrid SPAC2G11.02 BioGRID Interaction Datasets
Bähler Lab SPAC2G11.02 Cell Cycle Expression Profile
Bähler Lab SPAC2G11.02 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC2G11.02 Pheromone response/mating expression profiles
Bähler Lab SPAC2G11.02 Environmental stress expression profiles
Bähler Lab SPAC2G11.02 Bähler Lab Transcriptome Viewer
Cyclebase SPAC2G11.02 Cell Cycle Data
PInt SPAC2G11.02 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC2G11.02 Entrez Gene
SPD / RIKEN39/39D12Orfeome Localization Data
WikiGene2541516ribosome biogenesis protein Urb2 (predicted)
Uniprot_genenameURB2
EntrezGene2541516ribosome biogenesis protein Urb2 (predicted)
UniProtKB/SwissProtQ09804Probable nucleolar pre-ribosomal-associated protein 2
ModBaseQ09804Database of comparative protein structure models
Pfam Protein DomainsQ09804Pfam Domain Arrangement
RefSeq PeptideNP_593082ribosome biogenesis protein Urb2 (predicted)
RefSeq mRNANM_001018480972h- ribosome biogenesis protein Urb2 (predicted) (urb2), mRNA
European Nucleotide ArchiveCAA91167ENA Protein Mapping
UniParcUPI000013A003UniProt Archive

Literature for urb2
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013