tsn1 (SPAC30.03c)

Synonyms tsn, mug90 ChromosomeI
Producttranslin Gene Start4395639
Feature Typeprotein coding Gene End4394376
Name DescriptionMeiotically Upregulated Gene CDS Start4395592
Characterisation Statuspublished CDS End4394707

Ensembl Gene Location
sec72 SPAC30.02c > tsn1 < SPNCRNA.983 abc4 SPNCRNA.984 SPNCRNA.246 SPNCRNA.985 pof11
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
143956394395530
243954914395416
343953674395131
443950924395010
543949674394799
643947414394376

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF01997 Pfam Translin 17 218 137.1 2
74784 Superfamily 1 220 163.9 2

Protein Properties

Ave. residue weight 115.88 Da
Charge -0.50
Isoelectric point 6.40
Molecular weight 25.49 kDa
Number of residues 220
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viable
Temporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
NOT GO:0000724double-strand break repair via homologous recombinationTASTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
NOT GO:0006303double-strand break repair via nonhomologous end joiningTASTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0003723RNA bindingIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0003723
GO:0005515protein bindingIPI SPCC736.09cTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005515
GO:0043047single-stranded telomeric DNA bindingIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0043047

Gene Expression

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DescriptionSourceAll Genes
post transcriptional regulation of Tsn1 expression Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002500
expressed during meiosis Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000123

DNA Binding Specificity

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DescriptionSourceAll Genes
binds d(GT)n Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002498
binds d(GTT)n Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002499

Disease Association

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DescriptionSourceAll Genes
cancer Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000239

Subunit Composition

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DescriptionSourceAll Genes
octomeric Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002497

Species Distribution

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DescriptionSourceAll Genes
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
SPCC736.09cTRAX Two-hybrid
Affinity Capture-MS
Two-hybrid
Two-hybrid

External References

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Database Identifier Description
NBRP SPAC30.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC30.03c Retrieval of eukaryotic orthologs
BioGrid SPAC30.03c BioGRID Interaction Datasets
Bähler Lab SPAC30.03c Cell Cycle Expression Profile
Bähler Lab SPAC30.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPAC30.03c Pheromone response/mating expression profiles
Bähler Lab SPAC30.03c Environmental stress expression profiles
Bähler Lab SPAC30.03c Bähler Lab Transcriptome Viewer
Cyclebase SPAC30.03c Cell Cycle Data
Entrez Gene SPAC30.03c Link to Entrez Gene
SPD / RIKEN43/43E06Orfeome Localization Data
UniProtKB/SwissProtQ9P7V3Translin-1
ArrayExpressQ9P7V3Link to ArrayExpress
RefSeq PeptideNP_594557translin
RefSeq mRNANM_001019986972h- translin (tsn1), mRNA
European Nucleotide ArchiveCU329670ENA EMBL mapping
European Nucleotide ArchiveCAB66462ENA Protein Mapping
UniParcUPI0001B0624FUniProt Archive

Literature for tsn1

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Search: UK PMC or PubMed