nup124 (SPAC30D11.04c)


Gene Standard Namenup124 Characterisation Statuspublished
Systematic IDSPAC30D11.04c Feature Typeprotein coding
Synonyms Name DescriptionNUclear Pore factor
Productnucleoporin Nup124 Product Size1159aa, 123.97 kDa
Genomic Location Chromosome I, 1112170-1115868 (3699nt); CDS:1112214-1115736 (3523nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
protein binding851
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
nuclear import21
Annotation ExtensionEvidenceWith/FromReference
protein import into nucleus21
Annotation ExtensionEvidenceWith/FromReference
ribosomal subunit export from nucleus29
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
nuclear envelope136
Annotation ExtensionEvidenceWith/FromReference
nuclear pore53
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
inviable spore populationnup124ΔNull7
normal vegetative cell population growth ratenup124-1 (722->stop)Not specified60
sensitive to bortezomibnup124ΔNull256
sensitive to camptothecinnup124ΔNull219
nup124ΔNull
viable vegetative cell populationnup124ΔNull3783

Cell Phenotype

Term NameAlleleExpressionCount
abolished transposition1
affecting SO:0000186nup124-1 (722->stop)Not specified
abolished VLP localization to nucleus during vegetative growthnup124-1 (722->stop)Not specified1
inviable sporenup124ΔNull468
normal RNA level during vegetative growth92
affecting rec8nup124ΔNull
affecting mei4nup124ΔNull
viable vegetative cell with normal cell morphologynup124ΔNull3092
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
111121701112464
211125081115868

UTRs

Region Coordinates Reference
five_prime_UTR1112170..1112213PMID:21511999
three_prime_UTR1115737..1115868PMID:21511999
mRNA1112170..1115868
exon1112214..1112464,1112508..1115736
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF10599 Pfam IPR018892 Retro-transposon transporting, conserved site 1073 1158 1
PF08604 Pfam IPR013913 Nucleoporin, Nup153-like 112 562 1
PTHR23193:SF22 HMMPANTHER 267 1147 1
PTHR23193 HMMPANTHER 267 1147 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000574FG repeatTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000574

Protein Properties

Ave. residue weight 106.97 Da
Charge 38.50
Isoelectric point 10.26
Molecular weight 123.97 kDa
Number of residues 1159
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1670
present during mitotic M phaseS241
present during mitotic M phaseS413
present during mitotic M phase, cellular response to thiabendazoleS380
present during mitotic M phaseS563
present during mitotic M phaseS467
present during mitotic M phase, cellular response to thiabendazoleS211
present during mitotic M phase, cellular response to thiabendazoleS465
present during mitotic M phaseS697
present during mitotic M phaseS124
level fluctuates during mitotic cell cycleS549
S207, S209, S215, S219, S380, S465, S563, S896, S992
present during mitotic M phaseS145
present during mitotic M phaseS235
level fluctuates during mitotic cell cycleS244
present during mitotic M phaseS244
present during mitotic M phaseS215
present during mitotic M phaseS207
present during mitotic M phase, cellular response to thiabendazoleS209
present during cellular response to thiabendazoleS386
present during mitotic M phaseS146
present during mitotic M phaseS549
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S124 PMID:21712547
present during mitotic M phase experimental evidence S145 PMID:21712547
present during mitotic M phase experimental evidence S146 PMID:21712547
experimental evidence S207 PMID:24763107
present during mitotic M phase experimental evidence S207 PMID:21712547
experimental evidence S209 PMID:24763107
present during cellular response to thiabendazole IDA S209 PMID:18257517
present during mitotic M phase experimental evidence S209 PMID:21712547
present during mitotic M phase experimental evidence S211 PMID:21712547
present during cellular response to thiabendazole IDA S211 PMID:18257517
experimental evidence S215 PMID:24763107
present during mitotic M phase experimental evidence S215 PMID:21712547
experimental evidence S219 PMID:24763107
present during mitotic M phase experimental evidence S235 PMID:21712547
present during mitotic M phase experimental evidence S241 PMID:21712547
present during mitotic M phase experimental evidence S244 PMID:21712547
level fluctuates during mitotic cell cycle experimental evidence S244 PMID:24763107
experimental evidence S380 PMID:24763107
present during mitotic M phase experimental evidence S380 PMID:21712547
present during cellular response to thiabendazole IDA S380 PMID:18257517
present during cellular response to thiabendazole IDA S386 PMID:18257517
present during mitotic M phase experimental evidence S413 PMID:21712547
experimental evidence S465 PMID:24763107
present during cellular response to thiabendazole IDA S465 PMID:18257517
present during mitotic M phase experimental evidence S465 PMID:21712547
present during mitotic M phase experimental evidence S467 PMID:21712547
level fluctuates during mitotic cell cycle experimental evidence S549 PMID:24763107
present during mitotic M phase experimental evidence S549 PMID:21712547
experimental evidence S563 PMID:24763107
present during mitotic M phase experimental evidence S563 PMID:21712547
present during mitotic M phase experimental evidence S697 PMID:21712547
experimental evidence S896 PMID:24763107
experimental evidence S992 PMID:24763107
O-phospho-L-threonine 694
present during mitotic M phaseT76
present during mitotic M phaseT406
present during mitotic M phaseT126
present during mitotic M phaseT429
T72, T162, T429
present during mitotic M phaseT72
present during mitotic M phaseT162
Annotation ExtensionEvidenceResidueReference
experimental evidence T72 PMID:24763107
present during mitotic M phase experimental evidence T72 PMID:21712547
present during mitotic M phase experimental evidence T76 PMID:21712547
present during mitotic M phase experimental evidence T126 PMID:21712547
experimental evidence T162 PMID:24763107
present during mitotic M phase experimental evidence T162 PMID:21712547
present during mitotic M phase experimental evidence T406 PMID:21712547
experimental evidence T429 PMID:24763107
present during mitotic M phase experimental evidence T429 PMID:21712547
phosphorylated residue 1923
Annotation ExtensionEvidenceResidueReference
NAS PMID:18257517
IDA PMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
5760during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
5405during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
5738during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
6078during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
5947.63during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
5455during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
1390.42during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
6.9during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
2.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4604
conserved in eukaryotes4516
conserved in metazoa3432
conserved in vertebrates3407
conserved in eukaryotes only2503
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
positive genetic interaction withago1argonaute Positive GeneticPMID:22681890
positive genetic interaction withair1zinc knuckle TRAMP complex subunit Air1 Positive GeneticPMID:22681890
negative genetic interaction withamk2AMP-activated protein kinase beta subunit Amk2 Negative GeneticPMID:22681890
positive genetic interaction withams2cell cycle regulated GATA-type transcription factor Ams2 Positive GeneticPMID:22681890
negative genetic interaction withark1aurora-B kinase Ark1 Negative GeneticPMID:22681890
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
positive genetic interaction withatg1autophagy and CVT pathway serine/threonine protein kinase Atg1 Positive GeneticPMID:22681890
negative genetic interaction withbdc1bromodomain containing protein 1, Bdc1 Negative GeneticPMID:22681890
positive genetic interaction withcid12poly(A) polymerase Cid12 Positive GeneticPMID:22681890
negative genetic interaction withclp1Cdc14-related protein phosphatase Clp1/Flp1 Negative GeneticPMID:22681890
negative genetic interaction withclr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:22681890
negative genetic interaction withcut15karyopherin Cut15 Negative GeneticPMID:22681890
negative genetic interaction withcut3condensin complex subunit Cut3 Negative GeneticPMID:22681890
negative genetic interaction withcwf15complexed with Cdc5 protein Cwf15 Negative GeneticPMID:22681890
positive genetic interaction withdmc1RecA family ATPase Dmc1 Positive GeneticPMID:22681890
negative genetic interaction withdsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:21504829
negative genetic interaction withdsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:22681890
negative genetic interaction withdsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
negative genetic interaction withdsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:22681890
negative genetic interaction withdsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
negative genetic interaction withdsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:22681890
negative genetic interaction withdsc4Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
negative genetic interaction withdsc4Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:22681890
positive genetic interaction withelp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withfar10SIP/FAR complex FHA domain subunit Far10/Csc1 Negative GeneticPMID:22681890
negative genetic interaction withgcn20AAA family ATPase Gcn20 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withhip1hira protein, histone chaperone Hip1 Positive GeneticPMID:22681890
positive genetic interaction withhip4histone promoter control protein Hip4 Positive GeneticPMID:22681890
positive genetic interaction withhrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Positive GeneticPMID:22681890
negative genetic interaction withmcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
negative genetic interaction withmid1medial ring protein Mid1 Negative GeneticPMID:22681890
negative genetic interaction withmug154conserved fungal protein Negative GeneticPMID:22681890
negative genetic interaction withngg1SAGA complex subunit Ngg1 Negative GeneticPMID:22681890
negative genetic interaction withnot3CCR4-Not complex subunit Not3/5 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withnrm1MBF complex corepressor Nrm1 Negative GeneticPMID:22681890
negative genetic interaction withnup132nucleoporin Nup132 Negative GeneticPMID:22681890
negative genetic interaction withnup61nucleoporin Nup61 Negative GeneticPMID:22681890
enhances phenotype ofnup61nucleoporin Nup61 Phenotypic EnhancementPMID:19547744
negative genetic interaction withpar1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
negative genetic interaction withpck1protein kinase C (PKC)-like Pck1 Negative GeneticPMID:22681890
negative genetic interaction withphp5CCAAT-binding factor complex subunit Php5 Negative GeneticPMID:22681890
negative genetic interaction withpht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:22681890
negative genetic interaction withpmc1mediator complex subunit Pmc1 Negative GeneticPMID:22681890
negative genetic interaction withprw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
negative genetic interaction withraf2Rik1-associated factor Raf2 Negative GeneticPMID:22681890
negative genetic interaction withrik1silencing protein Rik1 Negative GeneticPMID:22681890
negative genetic interaction withrpa12DNA-directed RNA polymerase complex I subunit Rpa12 Negative GeneticPMID:22681890
negative genetic interaction withrxt2histone deacetylase complex subunit Rxt2 Negative GeneticPMID:22681890
negative genetic interaction withsap14U2 snRNP-associated protein SF3B14 Sap14 Negative GeneticPMID:22681890
negative genetic interaction withset1histone lysine methyltransferase Set1 Negative GeneticPMID:22681890
negative genetic interaction withsgf29SAGA complex subunit Sgf29 Negative GeneticPMID:22681890
negative genetic interaction withsif1Sad1 interacting factor 1 Negative GeneticPMID:22681890
positive genetic interaction withSPAC1486.03cRNA-binding splicing factor (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:22681890
negative genetic interaction withSPBC1861.07elongin C (predicted) Negative GeneticPMID:22681890
negative genetic interaction withspf1Set1C PHD Finger protein Spf1 Negative GeneticPMID:22681890
positive genetic interaction withsrb10cyclin-dependent protein Srb mediator subunit kinase Srb10 Positive GeneticPMID:22681890
negative genetic interaction withsrp1SR family protein, human SRFS2 ortholog Srp1 Negative GeneticPMID:22681890
negative genetic interaction withssp2serine/threonine protein kinase Ssp2 Negative GeneticPMID:22681890
negative genetic interaction withsty1MAP kinase Sty1 Negative GeneticPMID:22681890
positive genetic interaction withswc3Swr1 complex subunit Swc3 Positive GeneticPMID:22681890
negative genetic interaction withswd1Set1C complex subunit Swd1 Negative GeneticPMID:22681890
negative genetic interaction withswd2Set1C complex subunit Swd2.1 Negative GeneticPMID:22681890
negative genetic interaction withswd3WD repeat protein Swd3 Negative GeneticPMID:22681890
positive genetic interaction withtom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withvph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withvps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
negative genetic interaction withvps5retromer complex subunit Vps5 Negative GeneticPMID:22681890
negative genetic interaction withxap5xap-5-like protein Negative GeneticPMID:24957674
positive genetic interaction withxks1xylulose kinase Xks1 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withyke2prefoldin subunit 6, Yke2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withypa2protein phosphatase type 2A regulator, PTPA family Ypa2 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPAC30D11.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC30D11.04c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPAC30D11.04c BioGRID Interaction Datasets
Expression Viewer SPAC30D11.04c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPAC30D11.04c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPAC30D11.04c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPAC30D11.04c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPAC30D11.04c Polyadenylation Viewer (Gullerova lab)
pombeTV SPAC30D11.04c Transcriptome Viewer (Bähler Lab)
Cyclebase SPAC30D11.04c Cell Cycle Data
GEO SPAC30D11.04c GEO profiles
PInt SPAC30D11.04c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPAC30D11.04c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPAC30D11.04c Fission yeast phenotypic data & analysis
SPD / RIKEN48/48D05Orfeome Localization Data
UniProtKB/SwissProtQ09904Nucleoporin nup124
ModBaseQ09904Database of comparative protein structure models
STRINGQ09904Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_593213nucleoporin Nup124
RefSeq mRNANM_001018609972h- nucleoporin Nup124 (nup124), mRNA
European Nucleotide ArchiveAAF90179.1ENA Protein Mapping
European Nucleotide ArchiveCAA91890.1ENA Protein Mapping
UniParcUPI000012FC0FUniProt Archive

Literature for nup124

Search: Europe PMC or PubMed

Release Version: PomBase:25_49 - 02 Feb 2015