abo1 (SPAC31G5.19)

Gene Standard Nameabo1 ChromosomeI
Systematic IDSPAC31G5.19 Gene Start3023051
Synonyms Gene End3028158
ProductATPase with bromodomain protein (predicted) Gene Length5108
Feature Typeprotein coding CDS Start3024418
Name Description CDS End3027990
Characterisation Statusbiological_role_inferred CDS Length3573

Ensembl Gene Location
  1. dpm1
  2. rps1001
  3. sde2
  4. abo1
  5. SPAC1786.01c
  6. SPNCRNA.876
  7. SPNCRNA.877
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyabo1delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0005524ATP bindingISMPFAM:PF00004GO_REF:0000001
GO:0016887ATPase activityISMPFAM:PF00004GO_REF:0000001
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006338chromatin remodelingISMPFAM:PF00439GO_REF:0000001
GO:0006357regulation of transcription from RNA polymerase II promoterISOSGD:S000003502GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0000790nuclear chromatinISMPFAM:PF00439GO_REF:0000001
GO:0005634nucleusIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130230513023169
230232323028158

References

Region Start End Reference
three_prime_UTR30279913028158PMID:21511999
five_prime_UTR30230513023169PMID:21511999
three_prime_UTR30279913028158PMID:21511999
five_prime_UTR30232323024417PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00004 IPR003959 Pfam ATPase, AAA-type, core 303 438 32
PF00004 IPR003959 Pfam ATPase, AAA-type, core 606 722 32
SM00382 IPR003593 SMART AAA+ ATPase domain 299 440 73
SM00382 IPR003593 SMART AAA+ ATPase domain 601 705 73
PS00674 IPR003960 Prosite Patterns ATPase, AAA-type, conserved site 408 426 19
G3DSA:1.10.8.60 Gene3D 447 529 34
G3DSA:3.40.50.300 Gene3D 590 745 279
G3DSA:3.40.50.300 Gene3D 264 446 279
SSF47370 IPR001487 SuperFamily 865 913 10
SSF52540 SuperFamily 264 529 294
SSF52540 SuperFamily 591 751 294
PTHR23069:SF0 hmmpanther 13 1189 2
PTHR23069 hmmpanther 13 1189 2

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:18257517
PMID:19547744

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000496bromodomainTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000496
PBO:0000539AAA family ATPaseTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000539

Protein Properties

Ave. residue weight 113.74 Da
Charge -28.50
Isoelectric point 4.99
Molecular weight 135.35 kDa
Number of residues 1190
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1598.58PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide801.32PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.94PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cbf11CBF1/Su(H)/LAG-1 family transcription factor Cbf11 Affinity Capture-MSPMID:22540037
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External References
Database Identifier Description
NBRP SPAC31G5.19 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPAC31G5.19 Retrieval of eukaryotic orthologs
BioGrid SPAC31G5.19 BioGRID Interaction Datasets
Bähler Lab SPAC31G5.19 Cell Cycle Expression Profile
Bähler Lab SPAC31G5.19 Meiosis/Sporulation Expression Profies
Bähler Lab SPAC31G5.19 Pheromone response/mating expression profiles
Bähler Lab SPAC31G5.19 Environmental stress expression profiles
Bähler Lab SPAC31G5.19 Bähler Lab Transcriptome Viewer
Cyclebase SPAC31G5.19 Cell Cycle Data
PInt SPAC31G5.19 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPAC31G5.19 Entrez Gene
WikiGene2543084ATPase with bromodomain protein
EntrezGene2543084ATPase with bromodomain protein
SPD / RIKEN48/48D10Orfeome Localization Data
UniProtKB/SwissProtO14114Uncharacterized AAA domain-containing protein C31G5.19
ModBaseO14114Database of comparative protein structure models
Pfam Protein DomainsO14114Pfam Domain Arrangement
RefSeq PeptideNP_594020ATPase with bromodomain protein
RefSeq mRNANM_001019446972h- ATPase with bromodomain protein (SPAC31G5.19), mRNA
European Nucleotide ArchiveCAB11703ENA Protein Mapping
UniParcUPI0000069930UniProt Archive

Literature for abo1
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013